Browse Element(s) Details


Os.17878.1.S1_at

Description gb:AK073134.1
DB_XREF= gi:32983157
TID=Os.17878.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1119_A04.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023F16, full insert sequence.
FL= gb:AK073134.1 gb:AK063837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0277011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02770Os.17878.1.S1_at11/117+1010179..1013284F-box domain containing protein, expressed
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed
LOC_Os07g02790Os.5591.1.S1_at11/117+1022177..1024721expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17878.1.S1_at--116--7251Chr07:1012124..1012148 (25 bp)
GTCCCAGCGTATTCCATGTTCTGAG
LOC_Os07g02770
Os.17878.1.S1_at--18--3231Chr07:1012822..1012846 (25 bp)
CAAGTTGCACTTGTGATCTTCCACC
LOC_Os07g02770
Os.17878.1.S1_at--20--9851Chr07:1012867..1012891 (25 bp)
TAAAGTTGGCATTCCTTCATGAGGT
LOC_Os07g02770
Os.17878.1.S1_at--835--7611Chr07:1012910..1012934 (25 bp)
GGGAACCGAACATCAAATTGCTCTT
LOC_Os07g02770
Os.17878.1.S1_at--395--1511Chr07:1012939..1012963 (25 bp)
AGCAGCTATTCGGTTGGGCAGCAAT
LOC_Os07g02770
Os.17878.1.S1_at--627--191Chr07:1012984..1013008 (25 bp)
ATTTCTGTCATTCAATCACTGAGAG
LOC_Os07g02770
Os.17878.1.S1_at--685--5311Chr07:1013018..1013042 (25 bp)
GAAGGTGTGCCAGATGTTACTAAGT
LOC_Os07g02770
Os.17878.1.S1_at--1018--8771Chr07:1013032..1013056 (25 bp)
TGTTACTAAGTTTCTCTAGGCCAGA
LOC_Os07g02770
Os.17878.1.S1_at--225--9231Chr07:1013109..1013133 (25 bp)
TCCAGAGGACAAATGCACCGCACTA
LOC_Os07g02770
Os.17878.1.S1_at--411--5091Chr07:1013123..1013147 (25 bp)
GCACCGCACTAAACTTGTTGCTTGA
LOC_Os07g02770
Os.17878.1.S1_at--977--3751Chr07:1013153..1013177 (25 bp)
CTCATTTTGCTTTCCAGTGTTGTAT
LOC_Os07g02770
Target Sequence 
GTCCCAGCGTATTCCATGTTCTGAGAATGAGCACTAGTATAAGAAGGTTGGAGCTGGCAACAGATATTTATTCTAGTAAT
CCGCAGGCACGAGCTGCATGTTCATCAAGTTGCACTTGTGATCTTCCACCAAATTGGAAAACTGAGGAACTAAAGTTGGC
ATTCCTTCATGAGGTAGAAATCAATAACTTCAGGGGAACCGAACATCAAATTGCTCTTGTGAAGCAGCTATTCGGTTGGG
CAGCAATGCTGAAAGACATGACAATAAATTTCTGTCATTCAATCACTGAGAGCATGGCAAGGAAGGTGTGCCAGATGTTA
CTAAGTTTCTCTAGGCCAGAAATACTCATGAATTTTTACATTTACCAACAAACGACATCAGGTTTTGTATGTTCCAGAGG
ACAAATGCACCGCACTAAACTTGTTGCTTGATTGTACTCATTTTGCTTTCCAGTGTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis