Browse Element(s) Details


OsAffx.28239.1.S1_at

Description gb:NM_194175.1
DB_XREF= gi:34915387
TID=OsAffx.28239.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OJ1119_A04.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0274011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein
LOC_Os07g02740OsAffx.28239.1.S1_at11/117+998418..998753hypothetical protein
LOC_Os07g02750Os.26886.3.S1_x_at5/117+1001966..1003454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g02760Os.9730.2.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02760Os.9730.1.S1_at11/117+1005085..1008435F-box domain containing protein, expressed
LOC_Os07g02770Os.17878.1.S1_at11/117+1010179..1013284F-box domain containing protein, expressed
LOC_Os07g02780Os.34851.1.S1_at11/117+1013653..1019896protein kinase family protein, putative, expressed
LOC_Os07g02790Os.5591.1.S1_at11/117+1022177..1024721expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28239.1.S1_at--548--1811Chr07:998491..998515 (25 bp)
ACGCCCGAAGCGATGACATTAGCGG
LOC_Os07g02740
OsAffx.28239.1.S1_at--1060--2671Chr07:998498..998522 (25 bp)
AAGCGATGACATTAGCGGTGACAGT
LOC_Os07g02740
OsAffx.28239.1.S1_at--25--2091Chr07:998506..998530 (25 bp)
ACATTAGCGGTGACAGTTGTGGCGT
LOC_Os07g02740
OsAffx.28239.1.S1_at--543--3971Chr07:998513..998537 (25 bp)
CGGTGACAGTTGTGGCGTAGATCAA
LOC_Os07g02740
OsAffx.28239.1.S1_at--968--2131Chr07:998518..998542 (25 bp)
ACAGTTGTGGCGTAGATCAAGTGAG
LOC_Os07g02740
OsAffx.28239.1.S1_at--26--1531Chr07:998576..998600 (25 bp)
AGCATGCGGTGCACAGGCCGAAGTT
LOC_Os07g02740
OsAffx.28239.1.S1_at--282--4231Chr07:998593..998617 (25 bp)
CCGAAGTTGGCGGTAGCGTCACTAG
LOC_Os07g02740
OsAffx.28239.1.S1_at--256--10851Chr07:998599..998623 (25 bp)
TTGGCGGTAGCGTCACTAGTTCACG
LOC_Os07g02740
OsAffx.28239.1.S1_at--267--6331Chr07:998635..998659 (25 bp)
GATGCACGGCATCCAAGGTGCAGCA
LOC_Os07g02740
OsAffx.28239.1.S1_at--152--1131Chr07:998677..998701 (25 bp)
AGTGCAAGGAGCAGTGGCGACACAT
LOC_Os07g02740
OsAffx.28239.1.S1_at--429--5631Chr07:998695..998719 (25 bp)
GACACATGAAGGGTGCGGTAGCATT
LOC_Os07g02740
Target Sequence 
ACGCCCGAAGCGATGACATTAGCGGTGACAGTTGTGGCGTAGATCAAGTGAGGCGCGAGAGGTGGAAGCGGGGAGCACCG
ACGGCAGCATGCGGTGCACAGGCCGAAGTTGGCGGTAGCGTCACTAGTTCACGGGGGGCGACGGGATGCACGGCATCCAA
GGTGCAGCAGGAGGACACGGTGCGGGAGTGCAAGGAGCAGTGGCGACACATGAAGGGTGCGGTAGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis