Browse Element(s) Details


Os.34631.1.S1_at

Description gb:AK070693.1
DB_XREF= gi:32980717
TID=Os.34631.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34631 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1119_A04.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023056A16, full insert sequence.
FL= gb:AK070693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02570Os.35752.2.S1_x_at11/117+923605..925137NB-ARC domain containing protein
LOC_Os07g02580Os.35752.3.S1_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02580Os.35752.3.S1_x_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34631.1.S1_at--556--6771Chr07:949406..949430 (25 bp)
GTTACGTGTTCAACTGTGAGGTAAA
LOC_Os07g02630
Os.34631.1.S1_at--976--6031Chr07:949351..949375 (25 bp)
GAGATCTCAGAAGCTCTGTACCTGA
LOC_Os07g02630
Os.34631.1.S1_at--343--1451Chr07:949343..949367 (25 bp)
AGAAGCTCTGTACCTGACCATCTCA
LOC_Os07g02630
Os.34631.1.S1_at--49--3871Chr07:949330..949354 (25 bp)
CTGACCATCTCATTGTTCTCTGAAA
LOC_Os07g02630
Os.34631.1.S1_at--231--8691Chr07:949257..949281 (25 bp)
TGTGAAATAGTTTGACCTACTGTCT
LOC_Os07g02630
Os.34631.1.S1_at--730--8911Chr07:949245..949269 (25 bp)
TGACCTACTGTCTGAGCAAATGCGT
LOC_Os07g02630
Os.34631.1.S1_at--1141--5111Chr07:949230..949254 (25 bp)
GCAAATGCGTAGTCCAAACTCGTAT
LOC_Os07g02630
Os.34631.1.S1_at--440--7251Chr07:949219..949243 (25 bp)
GTCCAAACTCGTATGTAAAATGTGC
LOC_Os07g02630
Os.34631.1.S1_at--596--6051Chr07:949185..949209 (25 bp)
GAGATTGTCAAACTGAAGTCTATCA
LOC_Os07g02630
Os.34631.1.S1_at--98--5331Chr07:949171..949195 (25 bp)
GAAGTCTATCAGCATCTACTAACAT
LOC_Os07g02630
Os.34631.1.S1_at--232--3411Chr07:949162..949186 (25 bp)
CAGCATCTACTAACATTCTATATTT
LOC_Os07g02630
Target Sequence 
GTTACGTGTTCAACTGTGAGGTAAAGAGGTTACATCATATGGTCACCAGAAAGAAGAGATCTCAGAAGCTCTGTACCTGA
CCATCTCATTGTTCTCTGAAACTGATGCATAATGTAATTATCTTAAATTTTAATATAAATCTGAGCATTTGTGAAATAGT
TTGACCTACTGTCTGAGCAAATGCGTAGTCCAAACTCGTATGTAAAATGTGCTATTTGTAAGAGATTGTCAAACTGAAGT
CTATCAGCATCTACTAACATTCTATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis