Browse Element(s) Details


OsAffx.16053.2.S1_s_at

Description tigr:9635.m00175
TID=OsAffx.16053.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0267411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein
LOC_Os07g02720OsAffx.28238.1.S1_at11/117+988915..990865hypothetical protein
LOC_Os07g02730OsAffx.8830.1.S1_at11/117+991961..992350hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16053.2.S1_s_at--729--8091Chr07:968596..968620 (25 bp)
GGACGAAACCAAGTGCTTGGCGGTC
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--1095--1831Chr07:968594..968618 (25 bp)
ACGAAACCAAGTGCTTGGCGGTCGG
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--412--2651Chr07:968590..968614 (25 bp)
AACCAAGTGCTTGGCGGTCGGCGGT
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--587--3291Chr07:968558..968582 (25 bp)
CAAAGGCAGCCGGATCTGGAGATTC
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--434--2931Chr07:968556..968580 (25 bp)
AAGGCAGCCGGATCTGGAGATTCCG
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--959--6391Chr07:968546..968570 (25 bp)
GATCTGGAGATTCCGGCGACAACGG
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--716--8751Chr07:968515..968539 (25 bp)
TGTACGGACGGCGATGCCTCTACAA
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--430--6991Chr07:968514..968538 (25 bp)
GTACGGACGGCGATGCCTCTACAAC
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--421--8111Chr07:968510..968534 (25 bp)
GGACGGCGATGCCTCTACAACCATC
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--721--2211Chr07:968494..968518 (25 bp)
ACAACCATCCCGTCTGACAGACAGG
LOC_Os07g02674
OsAffx.16053.2.S1_s_at--584--3251Chr07:968493..968517 (25 bp)
CAACCATCCCGTCTGACAGACAGGT
LOC_Os07g02674
Target Sequence 
GGACGAAACCAAGTGCTTGGCGGTCGGCGGTGGAGCAGCAAAGGCAGCCGGATCTGGAGATTCCGGCGACAACGGCGGCG
CTGTACGGACGGCGATGCCTCTACAACCATCCCGTCTGACAGACAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16053.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis