Browse Element(s) Details


OsAffx.28236.2.S1_x_at

Description tigr:9635.m00169
TID=OsAffx.28236.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0264011/11hypothetical protein
LOC_Os07g026301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein
LOC_Os07g02650OsAffx.5186.1.S1_at11/117+956252..957608hypothetical protein
LOC_Os07g02660Os.40473.1.S1_at11/117+958899..961525NB-ARC domain containing protein
LOC_Os07g02674OsAffx.16053.1.S1_x_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16052.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.28237.1.S1_at11/117+962718..968699expressed protein
LOC_Os07g02674OsAffx.16053.2.S1_s_at11/117+962718..968699expressed protein
LOC_Os07g02674Os.34986.1.S1_at1/117+962718..968699expressed protein
LOC_Os07g02674Os.26818.2.S1_at1/117+962718..968699expressed protein
LOC_Os07g02690Os.39706.1.S1_at11/117+971167..971827expressed protein
LOC_Os07g02690Os.23172.1.S1_x_at3/117+971167..971827expressed protein
LOC_Os07g02690Os.46022.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.36607.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02690Os.40003.1.S1_x_at1/117+971167..971827expressed protein
LOC_Os07g02700OsAffx.5189.1.S1_at4/117+974620..975048hypothetical protein
LOC_Os07g02700Os.23172.1.S1_x_at2/117+974620..975048hypothetical protein
LOC_Os07g02700Os.46022.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02700Os.40003.1.S1_x_at1/117+974620..975048hypothetical protein
LOC_Os07g02710Os.7343.1.S1_at11/117+976764..980147expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28236.2.S1_x_at--820--9892Chr07:955077..955101 (25 bp)
TACTGAAGAAGCATACTGGTACTTT
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--901--1972Chr07:955076..955100 (25 bp)
ACTGAAGAAGCATACTGGTACTTTT
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--547--3852Chr07:955075..955099 (25 bp)
CTGAAGAAGCATACTGGTACTTTTT
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--393--8992Chr07:955074..955098 (25 bp)
TGAAGAAGCATACTGGTACTTTTTC
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--671--5352Chr07:955073..955097 (25 bp)
GAAGAAGCATACTGGTACTTTTTCA
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--988--10533Chr07:954959..954983 (25 bp)
TTCATGGGTGCAAGCATCTACAGTG
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--928--6792Chr07:954906..954930 (25 bp)
GTTTTGGAACATGGCTCTGGCAAGC
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--492--10412Chr07:954905..954929 (25 bp)
TTTTGGAACATGGCTCTGGCAAGCA
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--537--10232Chr07:954904..954928 (25 bp)
TTTGGAACATGGCTCTGGCAAGCAT
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--553--10852Chr07:954903..954927 (25 bp)
TTGGAACATGGCTCTGGCAAGCATC
LOC_Os07g02640
OsAffx.28236.2.S1_x_at--62--8532Chr07:954902..954926 (25 bp)
TGGAACATGGCTCTGGCAAGCATCA
LOC_Os07g02640
Target Sequence 
TACTGAAGAAGCATACTGGTACTTTTTCAAGGTGNGCACANTCGGAAGCATGGATGNACAGGAGCACCCAAAGNTGGCAT
CAATNGCCATGGANATGGCCAGGGAGTTGNANGGGTGNTTCATGGGTGCAAGCATCTACAGTGNACTTNTGAAAGCAAAT
TTCAANGCTCGGTTTTGGAACATGGCTCTGGCAAGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28236.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis