Browse Element(s) Details


Os.18548.1.S1_x_at

Description gb:AU030486
DB_XREF= gi:3763734
DB_XREF=AU030486
CLONE=E51133_2Z
TID=Os.18548.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.18548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU030471(E51117),AU095070(E51117)~unknown protein (OJ1119_A04.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0259011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02540OsAffx.16049.1.S1_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.16049.1.S1_x_at11/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02540OsAffx.3615.1.S1_s_at1/117+907899..909184acetyltransferase, GNAT family protein, expressed
LOC_Os07g02550NANA7+916698..917609hypothetical protein
LOC_Os07g02560OsAffx.21075.2.S1_at11/117+918200..919735NB-ARC domain containing protein
LOC_Os07g02570Os.35752.2.S1_x_at11/117+923605..925137NB-ARC domain containing protein
LOC_Os07g02580Os.35752.3.S1_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02580Os.35752.3.S1_x_at11/117+926270..926677NADH ubiquinone oxidoreductase, 20 Kd subunit family protein
LOC_Os07g02590Os.18548.1.S1_x_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.34986.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02590Os.18548.1.S1_at11/117+926839..929603expressed protein
LOC_Os07g02600Os.46785.2.S1_x_at3/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.30226.2.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02600OsAffx.442.1.S1_x_at1/117+930625..936313retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g02610Os.34986.1.S1_at2/117+937911..940047hypothetical protein
LOC_Os07g02620OsAffx.21073.1.S1_at11/117+943506..945077NB-ARC domain containing protein
LOC_Os07g02630Os.34631.1.S1_at11/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.16053.1.S1_at1/117+949161..952105expressed protein
LOC_Os07g02630OsAffx.28236.2.S1_x_at1/117+949161..952105expressed protein
LOC_Os07g02640OsAffx.28236.2.S1_x_at11/117+954543..955950hypothetical protein
LOC_Os07g02640Os.34986.1.S1_at1/117+954543..955950hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18548.1.S1_x_at--974--3971Chr07:929385..929409 (25 bp)
CGGGTTCTTCCTGCAATGGCGGCGA
LOC_Os07g02590
Os.18548.1.S1_x_at--363--871Chr07:929370..929394 (25 bp)
ATGGCGGCGACTGACAGCAACGTTC
LOC_Os07g02590
Os.18548.1.S1_x_at--901--3251Chr07:929353..929377 (25 bp)
CAACGTTCTGTCTGCTTCTTTCGAT
LOC_Os07g02590
Os.18548.1.S1_x_at--281--9411Chr07:928883..928907 (25 bp)
TCTAGAACGCGGAATTGGTCAACTA
LOC_Os07g02590
Os.18548.1.S1_x_at--660--3511Chr07:928852..928876 (25 bp)
CATGTGACTGTGAAACTTGACGAGA
LOC_Os07g02590
Os.18548.1.S1_x_at--1059--2511Chr07:928839..928863 (25 bp)
AACTTGACGAGAAACCAGTGGTGCT
LOC_Os07g02590
Os.18548.1.S1_x_at--627--5551Chr07:928829..928853 (25 bp)
GAAACCAGTGGTGCTGAACCAATCT
LOC_Os07g02590
Os.18548.1.S1_x_at--1135--7771Chr07:928820..928844 (25 bp)
GGTGCTGAACCAATCTGTAGAACTT
LOC_Os07g02590
Os.18548.1.S1_x_at--811--6951Chr07:928804..928828 (25 bp)
GTAGAACTTTCTTTACTGCTTTCAT
LOC_Os07g02590
Os.18548.1.S1_x_at--200--10351Chr07:928793..928817 (25 bp)
TTTACTGCTTTCATCGTCACCGCTA
LOC_Os07g02590
Os.18548.1.S1_x_at--486--7091Chr07:928778..928802 (25 bp)
GTCACCGCTATGTGGACAGTCTTGT
LOC_Os07g02590
Target Sequence 
CGGGTTCTTCCTGCAATGGCGGCGACTGACAGCAACGTTCTGTCTGCTTCTTTCGATCCAGANNAATAGAAGGCCATTGC
AGTNTCTAGAACGCGGAATTGGTCAACTAAAAATTCATGTGACTGTGAAACTTGACGAGAAACCAGTGGTGCTGAACCAA
TCTGTAGAACTTTCTTTACTGCTTTCATCGTCACCGCTATGTGGACAGTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18548.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis