Browse Element(s) Details


Os.27417.1.S1_at

Description gb:CB646480
DB_XREF= gi:29641473
DB_XREF=OSJNEb09A01.r
CLONE=OSJNEb09A01
TID=Os.27417.1
CNT=12
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MRP protein (ATPGTP-binding protein) (P0480C01.27), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5217011/11Mrp protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27417.1.S1_at--375--2791Chr01:30338076..30338100 (25 bp)
AAGAGTTCTTGTTGCATCCAGCAAC
LOC_Os01g52170
Os.27417.1.S1_at--145--5311Chr01:30338106..30338130 (25 bp)
GAAGGAATGACCGATCTGCTCAAAG
LOC_Os01g52170
Os.27417.1.S1_at--195--1791Chr01:30338115..30338135 (21 bp)
ACCGATCTGCTCAAAGTGTGGACGA
LOC_Os01g52170
Os.27417.1.S1_at--867--2611Chr01:30338365..30338389 (25 bp)
AACCTGAAGAGATCCGTCCTATGGG
LOC_Os01g52170
Os.27417.1.S1_at--444--3991Chr01:30338379..30338403 (25 bp)
CGTCCTATGGGAAACTACGCAGTTT
LOC_Os01g52170
Os.27417.1.S1_at--853--1831Chr01:30338395..30338419 (25 bp)
ACGCAGTTTCTATAACTTGGCCTGA
LOC_Os01g52170
Os.27417.1.S1_at--518--6251Chr01:30338418..30338547 (25 bp)
GATGGTTTTTCTCAGATAGCACCTT
LOC_Os01g52170
Os.27417.1.S1_at--1058--6471Chr01:30338537..30338561 (25 bp)
GATAGCACCTTATGATCAATTGGAA
LOC_Os01g52170
Os.27417.1.S1_at--203--931Chr01:30338571..30338595 (25 bp)
AGGCTTGTGGATGTTCCTCGTGCAA
LOC_Os01g52170
Os.27417.1.S1_at--813--6271Chr01:30338580..30338604 (25 bp)
GATGTTCCTCGTGCAACAACAGCAG
LOC_Os01g52170
Os.27417.1.S1_at--766--6471Chr01:30338667..30338691 (25 bp)
GATACAATCGACTTTCAGAGTTTCT
LOC_Os01g52170
Target Sequence 
AAGAGTTCTTGTTGCATCCAGCAACAGTCAGAAGGAATGACCGATCTGCTCAAAGTGTGGACGAATGGACAGGTGAGCAG
AAAGTACAATATGGTGATATACCAGAAGACATTGAACCTGAAGAGATCCGTCCTATGGGAAACTACGCAGTTTCTATAAC
TTGGCCTGATGGTTTTTCTCAGATAGCACCTTATGATCAATTGGAAATGCTTGAGAGGCTTGTGGATGTTCCTCGTGCAA
CAACAGCAGCAGTCTCTTCATGATAGAGTAGAGATAATGTTCAGTCAGAAGGGGCAAGAAAACAAACTTTTGATACAATC
GACTTTCAGAGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis