Browse Element(s) Details


Os.41841.1.S1_at

Description gb:AK121195.1
DB_XREF= gi:37990818
TID=Os.41841.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41841 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) sulfate transporter-like protein (P0480C01.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086M22, full insert sequence.
FL= gb:AK121195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5213011/11sulfate transporter 3.5, putative, expressed
LOC_Os12g424301/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein
LOC_Os01g52150OsAffx.11571.1.S1_at11/111+30327567..30328222hypothetical protein
LOC_Os01g52160Os.34537.1.S1_at11/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52160Os.34537.2.S1_x_at7/111+30330379..30332760copper-binding family protein, putative, expressed
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008272biological_processsulfate transport
GO:0019761biological_processglucosinolate biosynthesis
GO:0005634cellular_componentnucleus
GO:0005516molecular_functioncalmodulin binding
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41841.1.S1_at--193--2691Chr01:30320355..30320379 (25 bp)
AAGCTGGTGCTGTCTGGATACGTCA
LOC_Os01g52130
Os.41841.1.S1_at--845--7211Chr01:30320437..30320461 (25 bp)
GTCGATACGCGCTGCAGATATCCAG
LOC_Os01g52130
Os.41841.1.S1_at--234--10171Chr01:30320482..30320506 (25 bp)
TATAGGGAGCTCTTTCTTGCGTAGA
LOC_Os01g52130
Os.41841.1.S1_at--651--1411Chr01:30320529..30320553 (25 bp)
AGACACTTGGGCAATGGGCAGGCAA
LOC_Os01g52130
Os.41841.1.S1_at--337--5011Chr01:30320559..30320583 (25 bp)
GCAGGACGAAATGCTCCACTATCAA
LOC_Os01g52130
Os.41841.1.S1_at--43--6571Chr01:30320597..30320621 (25 bp)
GATTCAGAAAGTACCACGAGCTAGT
LOC_Os01g52130
Os.41841.1.S1_at--943--2131Chr01:30320623..30320647 (25 bp)
ACAGTTTATTCAGTCGCATGGATTA
LOC_Os01g52130
Os.41841.1.S1_at--810--10852Chr01:30320668..30320692 (25 bp)
TTGGATTGTTGGTCGATCTCTGCAT
LOC_Os01g52130
Os.41841.1.S1_at--426--4051Chr01:30320681..30320705 (25 bp)
CGATCTCTGCATGTTCTGAATTGTG
LOC_Os01g52130
Os.41841.1.S1_at--4--8191Chr01:30320769..30320793 (25 bp)
GGAACCAGTGTTCGTGTATAGACTA
LOC_Os01g52130
Os.41841.1.S1_at--988--10511Chr01:30320845..30320869 (25 bp)
TTCAGGGTTGCATTGCTCAATTCAG
LOC_Os01g52130
Target Sequence 
AAGCTGGTGCTGTCTGGATACGTCAGGGACATCTTAGGGGATGAGTGGGTCTTCCTGACGGTCAAGGACGCCATCACGGC
GTGTCGATACGCGCTGCAGATATCCAGAAATAAGGGAGAAGACGAAGTATAGGGAGCTCTTTCTTGCGTAGAGCTGTTTA
GAAATTATAGGTGTAGACACTTGGGCAATGGGCAGGCAAGGCAAGCAGGACGAAATGCTCCACTATCAAAGGGTATGAGG
AAGATTCAGAAAGTACCACGAGCTAGTAACAGTTTATTCAGTCGCATGGATTAAGTAGTACTTGCTAGATGCTTTGGATT
GTTGGTCGATCTCTGCATGTTCTGAATTGTGGAGTATCATGGTAATTTCAGGTATTTGTTGATTAGGGGCAATGGGGAAT
ATAGTGAGGAGGATGGAACCAGTGTTCGTGTATAGACTAGTTTATATTCTGGGTTTACAGAGAAGTTCATAGATTTGCAT
GTAACAAACCTTCAGGGTTGCATTGCTCAATTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis