Browse Element(s) Details


Os.11450.1.S2_a_at

Description gb:AK070809.1
DB_XREF= gi:32980832
TID=Os.11450.1
CNT=184
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (P0480C01.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072L02, full insert sequence.
FL= gb:AK060327.1 gb:AK068005.1 gb:AY574990.1 gb:AK070809.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5211011/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52070OsAffx.21536.1.S1_at11/111+30270757..30275501cation channel family protein
LOC_Os01g52080OsAffx.2309.1.S1_at11/111+30276019..30276519hypothetical protein
LOC_Os01g52090OsAffx.23759.1.S1_at11/111+30276890..30279533expressed protein
LOC_Os01g52100Os.33038.1.S1_a_at11/111+30287541..30289912expressed protein
LOC_Os01g52110Os.11450.1.S1_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S3_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52110Os.11450.1.S2_a_at11/111+30291989..30297613CHY zinc finger family protein, expressed
LOC_Os01g52120Os.32374.2.S1_x_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.2.S1_at11/111+30298436..30298882expressed protein
LOC_Os01g52120Os.32374.3.S1_x_at3/111+30298436..30298882expressed protein
LOC_Os01g52130Os.41841.1.S1_at11/111+30314758..30320935sulfate transporter 3.5, putative, expressed
LOC_Os01g52140Os.19965.1.S1_at9/111+30322043..30326833expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11450.1.S2_a_at--732--8651Chr01:30295565..30295589 (25 bp)
TGGGCGCCATGGACGTACAACTTGA
LOC_Os01g52110
Os.11450.1.S2_a_at--273--8891Chr01:30295543..30295567 (25 bp)
TGAGTCTACTGCTGTTCAACATGGA
LOC_Os01g52110
Os.11450.1.S2_a_at--478--6191Chr01:30295500..30295524 (25 bp)
GAGGAACATGCTCTAGTTTCTCTGT
LOC_Os01g52110
Os.11450.1.S2_a_at--13--3771Chr01:30295490..30295514 (25 bp)
CTCTAGTTTCTCTGTTGTCTGATGA
LOC_Os01g52110
Os.11450.1.S2_a_at--745--5811Chr01:30295447..30295471 (25 bp)
GACCGAAGATGTGGACCCTGATGAT
LOC_Os01g52110
Os.11450.1.S2_a_at--139--5911Chr01:30295268..30295292 (25 bp)
GAGCTCCATGTTGCAACGAGATTTT
LOC_Os01g52110
Os.11450.1.S2_a_at--270--6611Chr01:30295242..30295266 (25 bp)
GATTGTCGGCATTGCCACAATGAAA
LOC_Os01g52110
Os.11450.1.S2_a_at--901--8991Chr01:30294511..30294535 (25 bp)
TGAAGAGGCATGAACTCCCACGCCA
LOC_Os01g52110
Os.11450.1.S2_a_at--29--9331Chr01:30294496..30294520 (25 bp)
TCCCACGCCATGAAGTGCAGCAGGT
LOC_Os01g52110
Os.11450.1.S2_a_at--912--251Chr01:30294470..30294494 (25 bp)
ATATGCTCGTTGTGTGGCACGGAAC
LOC_Os01g52110
Os.11450.1.S2_a_at--1042--2051Chr01:30294307..30294331 (25 bp)
ACTTCTGTGAAGTGTGCAAGCTCTT
LOC_Os01g52110
Target Sequence 
TGGGCGCCATGGACGTACAACTTGAGTCTACTGCTGTTCAACATGGACAAGCTAAGATAAATGTGGAGGAACATGCTCTA
GTTTCTCTGTTGTCTGATGAGAAGTACGCAACTGAAAAGACCGAAGATGTGGACCCTGATGATTATGAGAAACTTGAGGA
AGGGATAATGCAGTATGGGTGTGCACATTATCGAAGAAGGTGCCGCATTCGAGCTCCATGTTGCAACGAGATTTTTGATT
GTCGGCATTGCCACAATGAAACAAAGAATTCAATTAAAATTGATGCTGTGAAGAGGCATGAACTCCCACGCCATGAAGTG
CAGCAGGTTATATGCTCGTTGTGTGGCACGGAACAAGAGGTACGGCAAGTATGTATCAGTTGTGGTGTATGCATGGGGAA
GTACTTCTGTGAAGTGTGCAAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11450.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis