Browse Element(s) Details


OsAffx.22756.1.S1_s_at

Description gb:NM_186856.1
DB_XREF= gi:34900797
TID=OsAffx.22756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (P0021G06.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1466011/11Harpin-induced protein 1 containing protein, expressed
LOC_Os07g147401/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14610Os.11833.1.S1_at11/117+8332674..8334026Peptidase family M20/M25/M40 containing protein, expressed
LOC_Os07g14620NANA7+8339576..8339776hypothetical protein
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein
LOC_Os07g14700Os.31042.1.S1_at8/117+8380274..8381360Harpin-induced protein 1 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22756.1.S1_s_at--223--5151Chr07:8357457..8357481 (25 bp)
GCAACAACTGTAGGGACGGGCTCAT
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--929--1911Chr07:8357442..8357466 (25 bp)
ACGGGCTCATCGTGTGCGGCATCGT
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--752--8931Chr07:8357334..8357358 (25 bp)
TGACGCGGTTCAACCTGTCGGCGGC
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--256--8991Chr07:8357280..8357304 (25 bp)
TGAAGCTGGTCGTCCACAACCGCAA
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--554--2211Chr07:8357265..8357289 (25 bp)
ACAACCGCAACTGGGCGATGTCCGT
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--478--7571Chr07:8357253..8357277 (25 bp)
GGGCGATGTCCGTCAAGAACACCAA
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--210--3251Chr07:8357231..8357255 (25 bp)
CAAGCCCATGGACGCCGAGTACAAG
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--111--6091Chr07:8357215..8357239 (25 bp)
GAGTACAAGTTCGACGGCCAGCCGT
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--868--6151Chr07:8357006..8357030 (25 bp)
GAGGTACACGGCGAGGCTCACCAAG
LOC_Os07g14660
OsAffx.22756.1.S1_s_at--52--1712Chr07:8405432..8405456 (25 bp)
ACCAAGTGCAAGATCGAGGCGACGT
LOC_Os07g14740
OsAffx.22756.1.S1_s_at--566--4271Chr07:8356926..8356950 (25 bp)
CCTCCGTGGCGTTCCAGAAGGTCAA
LOC_Os07g14660
Target Sequence 
GCAACAACTGTAGGGACGGGCTCATCGTGTGCGGCATCGTCTTTGGCACCCTCCTCCTCGCCGTGCTCATCTCCGCGTTC
GGCTTCGTCCGCCAGCCCACCTTCGTCGTCGACGACGCCTCCCTGACGCGGTTCAACCTGTCGGCGGCGGCGTCGTCGAT
CGCCTACAACCTCACCCTGAAGCTGGTCGTCCACAACCGCAACTGGGCGATGTCCGTCAAGAACACCAAGCCCATGGACG
CCGAGTACAAGTTCGACGGCCAGCCGTTCGAGCGGATCCAGCTCGCCGACAAGGGCGACAAGCTCGGCCCCGGCAAGACG
GTGGTGCACCGGCTGTCGTCCGGCAGCGAGGGCGCGATCGTCCCGGCGCTGGGCAACGCCGGCGCCCAGGAGTACAGGAA
GGAGAGCGCCAAGGGGACGTTCGAGGTGGAGGTGGCGATCGCCGGCGAGGTGAGGTACACGGCGAGGCTCACCAAGTGCA
AGATCGAGGCGACGTGCCCGCTCAAGCTGCAGCTCGCGCCGCCGGGCACCACCTCCGTGGCGTTCCAGAAGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22756.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis