Browse Element(s) Details


Os.31042.1.S1_at

Description gb:AK107935.1
DB_XREF= gi:32993144
TID=Os.31042.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0021G06.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A06, full insert sequence.
FL= gb:AK107935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g147008/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein
LOC_Os07g14700Os.31042.1.S1_at8/117+8380274..8381360Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14710OsAffx.22402.1.S1_at4/117+8390048..8391870transposon protein, putative, Mariner sub-class
LOC_Os07g14720OsAffx.22402.1.S1_at2/117+8392424..8393109hypothetical protein
LOC_Os07g14740Os.40417.1.A1_at11/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14740OsAffx.22756.1.S1_s_at1/117+8405063..8406024Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31042.1.S1_at--271--5611Chr07:8380630..8380654 (25 bp)
GACAAGAACTGCTAGCGCGTCGCCA
LOC_Os07g14700
Os.31042.1.S1_at--918--9991Chr07:8380618..8380642 (25 bp)
TAGCGCGTCGCCATGGCTGTGCCTA
LOC_Os07g14700
Os.31042.1.S1_at--614--10351Chr07:8380576..8380600 (25 bp)
TTTATGCGATTGGTTTGTTTGTTCC
LOC_Os07g14700
Os.31042.1.S1_at--843--10233Chr12:8840458..8840477 (20 bp)
TTTGTGATTCAATTCCTCTCGGGAT
NONE
Os.31042.1.S1_at--769--5111Chr07:8380494..8380518 (25 bp)
GCACTATTGCGGTGTTTGATTCAAT
LOC_Os07g14700
Os.31042.1.S1_at--939--3671NONE
CTTTCATTATCTCTGCTGCTTTTCA
NONE
Os.31042.1.S1_at--637--4892Chr07:8380410..8380434 (25 bp)
GCTTTTCATTTGCACTTTTTATTCT
LOC_Os07g14700
Os.31042.1.S1_at--640--1231NONE
AGATTCGCTTTAGTACTCCCTTTTG
NONE
Os.31042.1.S1_at--287--6531Chr07:8380343..8380367 (25 bp)
GATTTTTGGGCTCTTTTATGCTTCC
LOC_Os07g14700
Os.31042.1.S1_at--937--8031NONE
GGAGTAGGTTGGTCAATCCAATGCA
NONE
Os.31042.1.S1_at--382--571Chr07:8380284..8380308 (25 bp)
ATCCAATGCAATGAGGCCTATTCCT
LOC_Os07g14700
Target Sequence 
GACAAGAACTGCTAGCGCGTCGCCATGGCTGTGCCTAAGCTTTGCTAGTGATTATTTATGCGATTGGTTTGTTTGTTCCT
CTGGTTNAGTTTGTGATTCAATTCCTCTCGGGATTNGTGGTGGATTTGAAGGAATTGCACTATTGCGGTGTTTGATTCAA
TTCAATTCAATTCTCTGATGATTGTGGAAGGGGAATTTCTCCTCTTTCATTATCTCTGCTGCTTTTCATTTGCACTTTTT
ATTCTGGAAAGTGAACCAGATTCGCTTTAGTACTCCCTTTTGTTTAGGATTTTTGGGCTCTTTTATGCTTCCCCTTTTAT
CCGTAAGTACTGGAGTAGGTTGGTCAATCCAATGCAATGAGGCCTATTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis