Browse Element(s) Details


OsAffx.22403.1.S1_at

Description tigr:9635.m01459
TID=OsAffx.22403.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1469010/11hypothetical protein
LOC_Os09g078401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14630OsAffx.28446.1.S1_at11/117+8346024..8347734UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os07g14640OsAffx.16264.1.S1_at8/117+8348554..8349231hypothetical protein
LOC_Os07g14650Os.25866.1.S1_x_at11/117+8350388..8353151expressed protein
LOC_Os07g14650Os.25866.2.S1_at11/117+8350388..8353151expressed protein
LOC_Os07g14660OsAffx.22756.1.S1_s_at11/117+8356892..8357509Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14670OsAffx.25729.2.S1_x_at2/117+8359369..8359740transposon protein, putative, unclassified
LOC_Os07g14680OsAffx.10172.1.S1_at10/117+8361096..8364868hypothetical protein
LOC_Os07g14690OsAffx.22403.1.S1_at10/117+8366168..8367375hypothetical protein
LOC_Os07g14700Os.31042.1.S1_at8/117+8380274..8381360Harpin-induced protein 1 containing protein, expressed
LOC_Os07g14710OsAffx.22402.1.S1_at4/117+8390048..8391870transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22403.1.S1_at--962--9376Chr12:19693370..19693395 (25 bp)
TCGAGACGCTCCCAAAAACTTGATC
NONE
OsAffx.22403.1.S1_at--662--9951Chr07:8366658..8366682 (25 bp)
TACCCGTGCAGGTTTCTCAGGCGGA
LOC_Os07g14690
OsAffx.22403.1.S1_at--696--7251Chr07:8366610..8366634 (25 bp)
GTCCTGGATCCGTGCGCGCAAGAGA
LOC_Os07g14690
OsAffx.22403.1.S1_at--703--1651Chr07:8366419..8366443 (25 bp)
AGCGCTTCTCAGGAAGTGCGAGAGA
LOC_Os07g14690
OsAffx.22403.1.S1_at--1161--7711Chr07:8366364..8366388 (25 bp)
GGTGGGAGCGCTTCTTGTCCGTTAC
LOC_Os07g14690
OsAffx.22403.1.S1_at--911--3951Chr07:8366339..8366363 (25 bp)
CGGAGTAACAGTCATGCCCGCATTG
LOC_Os07g14690
OsAffx.22403.1.S1_at--279--7133Chr07:8366329..8366353 (25 bp)
GTCATGCCCGCATTGAATCAGATTC
LOC_Os07g14690
OsAffx.22403.1.S1_at--852--3072Chr07:8366314..8366338 (25 bp)
AATCAGATTCAATTCCCGTCTCGGG
LOC_Os07g14690
OsAffx.22403.1.S1_at--882--6191Chr07:8366242..8366266 (25 bp)
GGGCGCTTCTCGTCCAGTAACGTGG
LOC_Os07g14690
OsAffx.22403.1.S1_at--946--4571Chr07:8366097..8366121 (25 bp)
GCGCTTCTCGTCTGTTACTGGAGTA
NONE
OsAffx.22403.1.S1_at--566--3911Chr07:8366198..8366222 (25 bp)
CTGGAGTAACAGTCGTGCCCGCATA
LOC_Os07g14690
Target Sequence 
TCGAGACGCTCCCAAAAACTTGATCGCCCGCCTACCCGTGCAGGTTTCTCAGGCGGACGGAGTTCCGGAGGCACCTGCTC
GTCCTGGATCCGTGCGCGCAAGAGATCAGAACTGGGGAAGACAGAGTAGCAGCACAGGAAACAAAAGAGGTTCAGCGATA
GGAGGAGGAAGTGCGAGAGACGGAGAGTGGAACCGGAGCTCTGTCGCGGTGGTTAGGAGGAGGAAGTGCGAGAGACAGAG
AGCGGAACCAGAGCTCTGTCGCGGTGGTGGGAGCGCTTCTCAGGAAGTGCGAGAGACGAAGAGTGGAACCGGAGCTCTGT
CGCGGTGGTGGGAGCGCTTCTTGTCCGTTACCGGAGTAACAGTCATGCCCGCATTGAATCAGATTCAATTCCCGTCTCGG
GAAGTGCGAGAGACGGAGAGCAGAACTGGAGCTCTGTCCCGGTGGTGGGGGCGCTTCTCGTCCAGTAACGTGGGGGCGCT
TCTCGTCTGTTACTGGAGTAACAGTCGTGCCCGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis