Browse Element(s) Details


Os.8775.1.S1_at

Description gb:AK059902.1
DB_XREF= gi:32969920
TID=Os.8775.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative synaptobrevin (P0021G06.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G08, full insert sequence.
FL= gb:AK059902.1 gb:AK102619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1454011/11Vesicle-associated membrane protein 724, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8775.1.S1_at--495--8091Chr07:8287920..8287943 (24 bp)
GGACCAGTTATAAAGCAGCACATGC
LOC_Os07g14540
Os.8775.1.S1_at--777--10531Chr07:8288976..8289087 (25 bp)
TTCCGATCTACAAAGTCAGGCCCAG
LOC_Os07g14540
Os.8775.1.S1_at--863--8611Chr07:8289152..8289176 (25 bp)
TGGTGGTTCTTGGAATTCTTTTGCT
LOC_Os07g14540
Os.8775.1.S1_at--593--3051Chr07:8289186..8289210 (25 bp)
AATCGTATGGGTGTCTGTTTGTCAA
LOC_Os07g14540
Os.8775.1.S1_at--1022--7671Chr07:8289211..8289235 (25 bp)
GGGTTTGACTGCACCAAGCACTGAA
LOC_Os07g14540
Os.8775.1.S1_at--476--7051Chr07:8289237..8289261 (25 bp)
GTAACTACTATCCTACTGTCGGTAT
LOC_Os07g14540
Os.8775.1.S1_at--1017--4291Chr07:8289248..8289272 (25 bp)
CCTACTGTCGGTATAGCTCTGCTAT
LOC_Os07g14540
Os.8775.1.S1_at--493--9551Chr07:8289326..8289350 (25 bp)
TCTTTGGCTTGATTTCTGCTGCACA
LOC_Os07g14540
Os.8775.1.S1_at--1081--3811Chr07:8289341..8289365 (25 bp)
CTGCTGCACATTTATCGCGATACAA
LOC_Os07g14540
Os.8775.1.S1_at--456--7411Chr07:8289389..8289413 (25 bp)
GTGTTATTCAAACCGTGTGACCAAC
LOC_Os07g14540
Os.8775.1.S1_at--958--1171Chr07:8289432..8289456 (25 bp)
AGTACGGTTGCTTGTCGATTGATCC
LOC_Os07g14540
Target Sequence 
GGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCA
AGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAG
ATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAG
AACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTT
TGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGAT
TGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTT
GAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTCGATTGATC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis