Browse Element(s) Details


Os.21957.1.S1_x_at

Description gb:AK065457.1
DB_XREF= gi:32975475
TID=Os.21957.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LeOPT1 - oligopeptide transporter (OSJNBb0012A20.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022B11, full insert sequence.
FL= gb:AK065457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0226010/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21957.1.S1_x_at--95--8151Chr10:790779..790803 (25 bp)
GGACAAAGGCTTCTCACATGCGCAG
LOC_Os10g02260
Os.21957.1.S1_x_at--360--4451Chr10:790741..790765 (25 bp)
GCCTTTCACTGTCCATGATCATGAT
LOC_Os10g02260
Os.21957.1.S1_x_at--791--6251Chr10:790719..790743 (25 bp)
GATGGTGTACGCAGCATTGCTCGAG
LOC_Os10g02260
Os.21957.1.S1_x_at--1147--2671Chr10:790691..790715 (25 bp)
AAGCGGCTGGCAATCGTGCAATCAA
LOC_Os10g02260
Os.21957.1.S1_x_at--358--6971Chr10:790646..790670 (25 bp)
GTAGCTGCTCCAATGAGTATCCTGT
LOC_Os10g02260
Os.21957.1.S1_x_at--985--1191Chr10:790631..790655 (25 bp)
AGTATCCTGTGGCAGACACCAGCAT
LOC_Os10g02260
Os.21957.1.S1_x_at--754--4971NONE
GCATCGGTATGTCTCAGCTCGCAAT
NONE
Os.21957.1.S1_x_at--1072--9611Chr10:790487..790511 (25 bp)
TCAGGAGCTTACTTCAACACGTTCG
LOC_Os10g02260
Os.21957.1.S1_x_at--517--1091Chr10:790393..790417 (25 bp)
AGGGCCATCTGGACTATTTCTTCTG
LOC_Os10g02260
Os.21957.1.S1_x_at--483--6851Chr10:790332..790356 (25 bp)
GTTTGTGTATTCTTCCACGAGGCAC
LOC_Os10g02260
Os.21957.1.S1_x_at--960--5971Chr10:790304..790328 (25 bp)
GAGAACACAGCTTCATGACCAGATT
LOC_Os10g02260
Target Sequence 
GGACAAAGGCTTCTCACATGCGCAGCGCATCGGAATCGGCCTTTCACTGTCCATGATCATGATGGTGTACGCAGCATTGC
TCGAGATGAAGCGGCTGGCAATCGTGCAATCAAGTGGCTTAGCAGACCACAATGTAGCTGCTCCAATGAGTATCCTGTGG
CAGACACCAGCATACTTTCTGCAAGGGGTTTCAGAGATTTTCAGCTGCATCGGTATGTCTCAGCTCGCAATCGCTTCAGG
AGCTTACTTCAACACGTTCGTGCTTGGCGCTGTCGCAGTGATCACGACGAGCAGTGGAGCACCTGGGTGGATTCCGGATA
ATCTGAATGAGGGCCATCTGGACTATTTCTTCTGGATGATGGCCACCCTTAGCTTACTTAATCTTGCCATGTTTGTGTAT
TCTTCCACGAGGCACAGAGAGAACACAGCTTCATGACCAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21957.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis