Browse Element(s) Details


Os.4008.1.S1_a_at

Description gb:AK070621.1
DB_XREF= gi:32980645
TID=Os.4008.1
CNT=8
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LeOPT1 - oligopeptide transporter (OSJNBb0012A20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063N08, full insert sequence.
FL= gb:AK071280.1 gb:AK070621.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0222011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02180NANA10+733549..735851retrotransposon protein, putative, unclassified
LOC_Os10g02190NANA10+736200..736730retrotransposon protein, putative, unclassified
LOC_Os10g02200OsAffx.18086.1.S1_x_at11/1110+738439..738985hypothetical protein
LOC_Os10g02210OsAffx.20798.1.S1_x_at9/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.20798.1.S1_at5/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.30217.1.S1_x_at2/1110+745328..749864POT family protein
LOC_Os10g02210Os.46546.2.S1_x_at1/1110+745328..749864POT family protein
LOC_Os10g02220Os.4008.1.S1_a_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02220Os.4008.2.S1_x_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed
LOC_Os10g02250OsAffx.30239.1.S1_at11/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250OsAffx.30223.1.S1_s_at1/1110+776906..783515Calcium binding EGF domain containing protein
LOC_Os10g02250Os.22461.1.S1_at1/1110+776906..783515Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4008.1.S1_a_at--322--3391Chr10:756381..756405 (25 bp)
CAGCGCCGGTGAGCATCATGTGGCA
LOC_Os10g02220
Os.4008.1.S1_a_at--276--911Chr10:756324..756348 (25 bp)
AGGCGTTCAGCGTGATCGGCATGAT
LOC_Os10g02220
Os.4008.1.S1_a_at--814--4031Chr10:756321..756345 (25 bp)
CGTTCAGCGTGATCGGCATGATGGA
LOC_Os10g02220
Os.4008.1.S1_a_at--78--1631Chr10:756316..756340 (25 bp)
AGCGTGATCGGCATGATGGAGTTCT
LOC_Os10g02220
Os.4008.1.S1_a_at--1029--4651Chr10:756315..756339 (25 bp)
GCGTGATCGGCATGATGGAGTTCTT
LOC_Os10g02220
Os.4008.1.S1_a_at--360--3991Chr10:756314..756338 (25 bp)
CGTGATCGGCATGATGGAGTTCTTC
LOC_Os10g02220
Os.4008.1.S1_a_at--399--9691Chr10:756058..756082 (25 bp)
TCAATCAGATATAGAGCCAATAACA
LOC_Os10g02220
Os.4008.1.S1_a_at--195--3191Chr10:756057..756081 (25 bp)
CAATCAGATATAGAGCCAATAACAA
LOC_Os10g02220
Os.4008.1.S1_a_at--796--3431Chr10:756053..756077 (25 bp)
CAGATATAGAGCCAATAACAACACG
LOC_Os10g02220
Os.4008.1.S1_a_at--672--231Chr10:756050..756074 (25 bp)
ATATAGAGCCAATAACAACACGCTG
LOC_Os10g02220
Os.4008.1.S1_a_at--1160--10171Chr10:756049..756073 (25 bp)
TATAGAGCCAATAACAACACGCTGT
LOC_Os10g02220
Target Sequence 
CAGCGCCGGTGAGCATCATGTGGCAGGCGCCGTCGTACCTGGTGCTGGGCGTGGCGGAGGCGTTCAGCGTGATCGGCATG
ATGGAGTTCTTCTACGAGCAGTCGCCGGAGTCGATGAAGAGCCTGTGCACGGCGCTCGGGCAGCTCGCCATCGCGGTCGC
CAACTACCTCAACTCCGGCGTGCTCGTCGTGGTGGCGGCGGCCACCACGCGCGGCGGCGGGGCCGGCTGGATCCCGGACA
ACCTCGACGAGGGGCACCTGGACTACTTCTTCTGGATGATGGCTGTTGTTAGCGTCCTCAACCTGCTGCACTTCTTGCAT
TGCTCAATCAGATATAGAGCCAATAACAACACGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4008.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis