Browse Element(s) Details


OsAffx.28496.2.S1_at

Description tigr:9635.m01798
TID=OsAffx.28496.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1786011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17830OsAffx.5356.1.S1_at11/117+10543677..10544222hypothetical protein
LOC_Os07g17840OsAffx.16314.1.S1_at11/117+10545832..10552192hypothetical protein
LOC_Os07g17840OsAffx.10439.1.S1_at3/117+10545832..10552192hypothetical protein
LOC_Os07g17850OsAffx.24046.2.S1_x_at11/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.7.S1_x_at4/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.3.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.5.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17860OsAffx.28496.2.S1_at11/117+10568443..10571852hypothetical protein
LOC_Os07g17860OsAffx.14745.1.S1_at1/117+10568443..10571852hypothetical protein
LOC_Os07g17870NANA7+10574929..10575522hypothetical protein
LOC_Os07g17880Os.24831.3.S1_x_at8/117+10579182..10581969retrotransposon protein, putative, unclassified
LOC_Os07g17880Os.24831.1.S1_x_at6/117+10579182..10581969retrotransposon protein, putative, unclassified
LOC_Os07g17880Os.24831.3.S1_s_at3/117+10579182..10581969retrotransposon protein, putative, unclassified
LOC_Os07g17890NANA7+10582450..10582994retrotransposon protein, putative, unclassified
LOC_Os07g17900NANA7+10590673..10590903hypothetical protein
LOC_Os07g17910NANA7+10592681..10598408retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28496.2.S1_at--566--9131Chr07:10570739..10570763 (25 bp)
TGCTGGTGGCAGTGTTCCGAAGAAA
LOC_Os07g17860
OsAffx.28496.2.S1_at--1143--2871Chr07:10570762..10570786 (25 bp)
AAGGGAGGATATTCTCGTCCGTGGT
LOC_Os07g17860
OsAffx.28496.2.S1_at--1152--991Chr07:10570767..10570791 (25 bp)
AGGATATTCTCGTCCGTGGTCAGGA
LOC_Os07g17860
OsAffx.28496.2.S1_at--225--7251Chr07:10570778..10570802 (25 bp)
GTCCGTGGTCAGGACCCGCTGGAAA
LOC_Os07g17860
OsAffx.28496.2.S1_at--699--8091Chr07:10570789..10570813 (25 bp)
GGACCCGCTGGAAAGCGACAAGCTC
LOC_Os07g17860
OsAffx.28496.2.S1_at--573--2691Chr07:10570808..10571027 (25 bp)
AAGCTCCGCGGAAAATCTTCGCAGA
LOC_Os07g17860
OsAffx.28496.2.S1_at--403--4691Chr07:10571012..10571034 (23 bp)
GCGGAAAATCTTCGCAGAATGGCGC
LOC_Os07g17860
OsAffx.28496.2.S1_at--580--1631Chr07:10571073..10571097 (25 bp)
AGCGTGTCCCCTGTGGCGACTTCGA
LOC_Os07g17860
OsAffx.28496.2.S1_at--685--4191Chr07:10571081..10571105 (25 bp)
CCCTGTGGCGACTTCGACTGGAGTC
LOC_Os07g17860
OsAffx.28496.2.S1_at--1013--7191Chr07:10571286..10571310 (25 bp)
GTCGTCGGCGAATCAGCGTACCGAT
LOC_Os07g17860
OsAffx.28496.2.S1_at--1065--3051Chr07:10571296..10571320 (25 bp)
AATCAGCGTACCGATCAGCTGGCGC
LOC_Os07g17860
Target Sequence 
TGCTGGTGGCAGTGTTCCGAAGAAAGGGAGGATATTCTCGTCCGTGGTCAGGACCCGCTGGAAAGCGACAAGCTCCGCGG
AAAATCTTCGCAGAATGGCGCAGGCGAAGGTGGCGCAAGGTGGGACTGATGCTGCTTCCAGCGTGTCCCCTGTGGCGACT
TCGACTGGAGTCGTGGTCGCTACTAAGGACCAGGAAGCAGCACCGAGTAGCCCTGCCGTCAGCCTCGTGCCTACCCGGGG
CTTGTCCACCGATGCCCTCACCTTGGGGGGAGCTCCAAGCGGAGATGGAGCGCATCCTCTAGGTCGGTGCTCGCGGCGTA
GGCCGCGAGATCAAGGAGGTGAGGGCGGCGGCGTCGTCGGCGAATCAGCGTACCGATCAGCTGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28496.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis