Browse Element(s) Details


OsAffx.5355.1.S1_at

Description tigr:9635.m01793
TID=OsAffx.5355.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1782011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17790NANA7+10520240..10523853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17800NANA7+10526982..10533652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17810Os.51869.1.S1_at2/117+10535832..10538453retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17820OsAffx.5355.1.S1_at11/117+10540233..10540544hypothetical protein
LOC_Os07g17830OsAffx.5356.1.S1_at11/117+10543677..10544222hypothetical protein
LOC_Os07g17840OsAffx.16314.1.S1_at11/117+10545832..10552192hypothetical protein
LOC_Os07g17840OsAffx.10439.1.S1_at3/117+10545832..10552192hypothetical protein
LOC_Os07g17850OsAffx.24046.2.S1_x_at11/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.7.S1_x_at4/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.3.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.5.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5355.1.S1_at--458--4811Chr07:10540384..10540408 (25 bp)
GCTCGGCTCGGGTCGACATCGACGA
LOC_Os07g17820
OsAffx.5355.1.S1_at--10--5792Chr07:10540404..10540428 (25 bp)
GACGACGGCGCTCTGACGGTCTTCA
LOC_Os07g17820
OsAffx.5355.1.S1_at--743--1852Chr07:10540405..10540429 (25 bp)
ACGACGGCGCTCTGACGGTCTTCAG
LOC_Os07g17820
OsAffx.5355.1.S1_at--660--8391Chr07:10540410..10540434 (25 bp)
GGCGCTCTGACGGTCTTCAGCGGTT
LOC_Os07g17820
OsAffx.5355.1.S1_at--959--4571Chr07:10540411..10540435 (25 bp)
GCGCTCTGACGGTCTTCAGCGGTTG
LOC_Os07g17820
OsAffx.5355.1.S1_at--777--4811Chr07:10540413..10540437 (25 bp)
GCTCTGACGGTCTTCAGCGGTTGCG
LOC_Os07g17820
OsAffx.5355.1.S1_at--334--3771Chr07:10540414..10540438 (25 bp)
CTCTGACGGTCTTCAGCGGTTGCGA
LOC_Os07g17820
OsAffx.5355.1.S1_at--946--9471Chr07:10540415..10540439 (25 bp)
TCTGACGGTCTTCAGCGGTTGCGAA
LOC_Os07g17820
OsAffx.5355.1.S1_at--191--3851Chr07:10540416..10540440 (25 bp)
CTGACGGTCTTCAGCGGTTGCGAAG
LOC_Os07g17820
OsAffx.5355.1.S1_at--564--9572Chr07:10540459..10540483 (25 bp)
TCTTCCTCACGAACCCGGTGGTGGC
LOC_Os07g17820
OsAffx.5355.1.S1_at--1042--3632Chr07:10540460..10540484 (25 bp)
CTTCCTCACGAACCCGGTGGTGGCG
LOC_Os07g17820
Target Sequence 
GCTCGGCTCGGGTCGACATCGACGACGGCGCTCTGACGGTCTTCAGCGGTTGCGAAGGGGCGGACGGGGTGCTCCTCTTC
CTCACGAACCCGGTGGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis