Browse Element(s) Details


OsAffx.31853.1.S1_at

Description tigr:9640.m02276
TID=OsAffx.31853.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2393011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23869OsAffx.16314.1.S1_at1/1112+13574084..13574766hypothetical protein
LOC_Os12g23880OsAffx.10439.1.S1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23880Os.10731.2.A1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23890OsAffx.7680.1.S1_at11/1112+13579956..13580287expressed protein
LOC_Os12g23900OsAffx.7681.1.S1_at11/1112+13584799..13585449hypothetical protein
LOC_Os12g23910NANA12+13587197..13590159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23920NANA12+13590476..13596565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed
LOC_Os12g23950OsAffx.19792.1.S1_at11/1112+13607703..13608806Protein kinase domain containing protein
LOC_Os12g23960NANA12+13612803..13613365hypothetical protein
LOC_Os12g23970OsAffx.31855.1.S1_at11/1112+13619303..13619584hypothetical protein
LOC_Os12g23980OsAffx.31856.1.S1_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_s_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_at4/1112+13622645..13624999Subtilase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0016572biological_processhistone phosphorylation
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030332molecular_functioncyclin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31853.1.S1_at--1124--6311Chr12:13597701..13597725 (25 bp)
GATGAAGTACACGATCTGCGACCTT
LOC_Os12g23930
OsAffx.31853.1.S1_at--703--471Chr12:13597688..13597712 (25 bp)
ATCTGCGACCTTGGGATGTCCGTGC
LOC_Os12g23930
OsAffx.31853.1.S1_at--720--3951Chr12:13597636..13597660 (25 bp)
CGGACGGCGTCCTCACGTCGATCTA
LOC_Os12g23930
OsAffx.31853.1.S1_at--132--1911Chr12:13597622..13597646 (25 bp)
ACGTCGATCTACAACGCGCCGGAGA
LOC_Os12g23930
OsAffx.31853.1.S1_at--569--9431Chr12:13597591..13597615 (25 bp)
TCGGGTCACGCCAGTACGACAGCCG
LOC_Os12g23930
OsAffx.31853.1.S1_at--276--1671Chr12:13597510..13597534 (25 bp)
AGCCGCTGTTCGACGGCGAGACCAA
LOC_Os12g23930
OsAffx.31853.1.S1_at--730--4611Chr12:13597495..13597519 (25 bp)
GCGAGACCAACCTGGCCATCATGGG
LOC_Os12g23930
OsAffx.31853.1.S1_at--341--3891Chr12:13597391..13597415 (25 bp)
CTGGTGCGGCGTTTCCGGGACTCCA
LOC_Os12g23930
OsAffx.31853.1.S1_at--678--4911Chr12:13597294..13597318 (25 bp)
GCTTCGACGTCCTCAGCGGGCTGCT
LOC_Os12g23930
OsAffx.31853.1.S1_at--573--3831Chr12:13597274..13597298 (25 bp)
CTGCTCGAGGGTAACCCGGAGAAGA
LOC_Os12g23930
OsAffx.31853.1.S1_at--696--3311Chr12:13597226..13597250 (25 bp)
CACATGCCGTGGTTCGAGGGCTCCG
LOC_Os12g23930
Target Sequence 
GATGAAGTACACGATCTGCGACCTTGGGATGTCCGTGCCGGCGGTGGACTCGCCGGGCTACTCGCCGGACGGCGTCCTCA
CGTCGATCTACAACGCGCCGGAGATCCTCCTCGGGTCACGCCAGTACGACAGCCGCGTCGACACGTGGGGGCTCGGCTGC
ATCATGGCCGAGCTGCTCGACGGGCCCGGCGAGCCGCTGTTCGACGGCGAGACCAACCTGGCCATCATGGGCAGCGTGCT
CCGGGTCATCGGCGCCGAGGGCGTCAAGTCGTGGCCGGGGCTCAAGCGGCTCGCCGACGAGCCGCAGGCGCTGGTGCGGC
GTTTCCGGGACTCCAGCCGCCTCCGGGAAAAGTTCCCCGGCGCCAGGGAGGCCCGCGTGGCGAGGCGGCCGGCGCTGTCG
CAGGCCGGCTTCGACGTCCTCAGCGGGCTGCTCGAGGGTAACCCGGAGAAGAGGCTCACGGCGATAGCCGCGCTCCACAT
GCCGTGGTTCGAGGGCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31853.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis