Browse Element(s) Details


OsAffx.19792.1.S1_at

Description tigr:9640.m02278
TID=OsAffx.19792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cell division control protein 2 homolog 1 (ec 2.7.1.-)., putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2395011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23900OsAffx.7681.1.S1_at11/1112+13584799..13585449hypothetical protein
LOC_Os12g23910NANA12+13587197..13590159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23920NANA12+13590476..13596565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed
LOC_Os12g23950OsAffx.19792.1.S1_at11/1112+13607703..13608806Protein kinase domain containing protein
LOC_Os12g23960NANA12+13612803..13613365hypothetical protein
LOC_Os12g23970OsAffx.31855.1.S1_at11/1112+13619303..13619584hypothetical protein
LOC_Os12g23980OsAffx.31856.1.S1_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_s_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_at4/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0016572biological_processhistone phosphorylation
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19792.1.S1_at--1000--7891Chr12:13608328..13608352 (25 bp)
GGTTCGCGCGCACCATGACCAAGGA
LOC_Os12g23950
OsAffx.19792.1.S1_at--717--3951Chr12:13608412..13608436 (25 bp)
CGGAGGTCATCCTCGGGTCGACGAC
LOC_Os12g23950
OsAffx.19792.1.S1_at--37--7811Chr12:13608427..13608451 (25 bp)
GGTCGACGACCTACGACGAGACGGT
LOC_Os12g23950
OsAffx.19792.1.S1_at--463--1791Chr12:13608519..13608543 (25 bp)
ACCGATGAGGAGTTGCTCGTCCGCA
LOC_Os12g23950
OsAffx.19792.1.S1_at--90--4991Chr12:13608541..13608565 (25 bp)
GCATCGCGGACGTTCTTGGCATGGA
LOC_Os12g23950
OsAffx.19792.1.S1_at--581--3611Chr12:13608555..13608579 (25 bp)
CTTGGCATGGACGACATCAGCGGAT
LOC_Os12g23950
OsAffx.19792.1.S1_at--963--7531Chr12:13608583..13608607 (25 bp)
GTGGCTACGAGGACTGTATGATCCC
LOC_Os12g23950
OsAffx.19792.1.S1_at--1016--10471Chr12:13608615..13608639 (25 bp)
TTAACCAAGATTAGACGGCGGCGCA
LOC_Os12g23950
OsAffx.19792.1.S1_at--243--3411Chr12:13608651..13608675 (25 bp)
CAGATGTTCGCCTTACCCGGGAGGG
LOC_Os12g23950
OsAffx.19792.1.S1_at--350--7731Chr12:13608698..13608722 (25 bp)
GGAGTTATCCAAGGCCGGGTACCAG
LOC_Os12g23950
OsAffx.19792.1.S1_at--894--6971Chr12:13608716..13608740 (25 bp)
GTACCAGGTGTTGAGCGGTCTTCTC
LOC_Os12g23950
Target Sequence 
GGTTCGCGCGCACCATGACCAAGGACAAGGAGGAGTCCGCGCCGCCGTACTCGAACCCCATCGCCGCGCTGGCGTACCGC
CCGCCGGAGGTCATCCTCGGGTCGACGACCTACGACGAGACGGTCGACTCGTGGGGTCTCGGCTGCATCATGGCGGAGCT
CCTCGCCGGCGAGCGCCTGCTCGTCGGGACGACCGATGAGGAGTTGCTCGTCCGCATCGCGGACGTTCTTGGCATGGACG
ACATCAGCGGATGGAGTGGCTACGAGGACTGTATGATCCCGAAAATTTTAACCAAGATTAGACGGCGGCGCAGCCGTCTG
CGCCAGATGTTCGCCTTACCCGGGAGGGGCGGTGGCCCCGGCCGTCGGCCGGAGTTATCCAAGGCCGGGTACCAGGTGTT
GAGCGGTCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis