Browse Element(s) Details


Os.23262.1.A1_at

Description gb:CA759095
DB_XREF= gi:25803134
DB_XREF=BR060003A10G07.ab1
CLONE=BR060003A10G07.ab1
TID=Os.23262.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23262 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51335 (A.thaliana) T51335 subtilisin-like proteinase AIR3, auxin-induced (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g239804/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed
LOC_Os12g23950OsAffx.19792.1.S1_at11/1112+13607703..13608806Protein kinase domain containing protein
LOC_Os12g23960NANA12+13612803..13613365hypothetical protein
LOC_Os12g23970OsAffx.31855.1.S1_at11/1112+13619303..13619584hypothetical protein
LOC_Os12g23980OsAffx.31856.1.S1_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_s_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_at4/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005576cellular_componentextracellular region
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009897cellular_componentexternal side of plasma membrane
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23262.1.A1_at--1010--2431NONE
AAAATGCCCTCAAAAGAAGCAAAAT
NONE
Os.23262.1.A1_at--412--1471NONE
AGCAAAATAACTGAAACTGGACTTT
NONE
Os.23262.1.A1_at--948--5531NONE
GAAACTGGACTTTACCATTCCTCCA
NONE
Os.23262.1.A1_at--245--1951NONE
ACTGGACTTTACCATTCCTCCAGTA
NONE
Os.23262.1.A1_at--801--3591NONE
CATTCCTCCAGTACCAGTAAGGGCA
NONE
Os.23262.1.A1_at--1130--10631NONE
TTCCTCCAGTACCAGTAAGGGCAAA
NONE
Os.23262.1.A1_at--518--4351NONE
CCAGTACCAGTAAGGGCAAAGTGCT
NONE
Os.23262.1.A1_at--420--10191Chr12:13622768..13622791 (24 bp)
TTTTGTAAACACAGGGTGTTCCTAT
LOC_Os12g23980
Os.23262.1.A1_at--399--2411Chr12:13622762..13622786 (25 bp)
AAACACAGGGTGTTCCTATGATATG
LOC_Os12g23980
Os.23262.1.A1_at--610--3471Chr12:13622757..13622781 (25 bp)
CAGGGTGTTCCTATGATATGAGTGT
LOC_Os12g23980
Os.23262.1.A1_at--741--7411Chr12:13622753..13622777 (25 bp)
GTGTTCCTATGATATGAGTGTGCTA
LOC_Os12g23980
Target Sequence 
AAAATGCCCTCAAAAGAAGCAAAATAACTGAAACTGGACTTTACCATTCCTCCAGTACCAGTAAGGGCAAAGTGCTGGCA
AGCTTGTGGTGAACGGACCCGTACNTAATGTGGGAGAAGCAAATTCAAGCTACACCGTGGAAANTGATATGCCTAGGGAG
GTGATGACAAGTGTGTCACCAACAAAGCTAGAATTCNCCAAGATGAAGGAGAAGAAAACATTTTCATTAAGCTTAAGTTG
GGATATTAGCAAAACTAACCATGCCGAGGGAAGCTTCAAGTGGGTATCTGAGAAGCATGTTGTGAGGAGCCCCATTGCAA
TTTTTTAGTGTGTTTTTGTAAACACAGGGTGTTCCTATGATATGAGTGTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23262.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis