Browse Element(s) Details


Os.23262.1.A1_s_at

Description gb:CA759095
DB_XREF= gi:25803134
DB_XREF=BR060003A10G07.ab1
CLONE=BR060003A10G07.ab1
TID=Os.23262.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.23262 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T51335 (A.thaliana) T51335 subtilisin-like proteinase AIR3, auxin-induced (imported) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2398011/11Subtilase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed
LOC_Os12g23950OsAffx.19792.1.S1_at11/1112+13607703..13608806Protein kinase domain containing protein
LOC_Os12g23960NANA12+13612803..13613365hypothetical protein
LOC_Os12g23970OsAffx.31855.1.S1_at11/1112+13619303..13619584hypothetical protein
LOC_Os12g23980OsAffx.31856.1.S1_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_s_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_at4/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010103biological_processstomatal complex morphogenesis
GO:0042127biological_processregulation of cell proliferation
GO:0005576cellular_componentextracellular region
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009897cellular_componentexternal side of plasma membrane
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23262.1.A1_s_at--524--2851Chr12:13623032..13623056 (25 bp)
AAGTGCTGGCAAGCTTGTGGTGAAC
LOC_Os12g23980
Os.23262.1.A1_s_at--617--5131Chr12:13622983..13623007 (25 bp)
GCAAATTCAAGCTACACCGTGGAAA
LOC_Os12g23980
Os.23262.1.A1_s_at--442--6491Chr12:13622956..13622980 (25 bp)
GATATGCCTAGGGAGGTGATGACAA
LOC_Os12g23980
Os.23262.1.A1_s_at--265--5611Chr12:13622936..13622960 (25 bp)
GACAAGTGTGTCACCAACAAAGCTA
LOC_Os12g23980
Os.23262.1.A1_s_at--140--7471Chr12:13622931..13622955 (25 bp)
GTGTGTCACCAACAAAGCTAGAATT
LOC_Os12g23980
Os.23262.1.A1_s_at--1153--5511Chr12:13622888..13622912 (25 bp)
GAAAACATTTTCATTAAGCTTAAGT
LOC_Os12g23980
Os.23262.1.A1_s_at--128--3711Chr12:13622871..13622895 (25 bp)
GCTTAAGTTGGGATATTAGCAAAAC
LOC_Os12g23980
Os.23262.1.A1_s_at--600--10311Chr12:13622856..13622880 (25 bp)
TTAGCAAAACTAACCATGCCGAGGG
LOC_Os12g23980
Os.23262.1.A1_s_at--101--9791Chr12:13622846..13622870 (25 bp)
TAACCATGCCGAGGGAAGCTTCAAG
LOC_Os12g23980
Os.23262.1.A1_s_at--1061--5391Chr12:13622832..13622856 (25 bp)
GAAGCTTCAAGTGGGTATCTGAGAA
LOC_Os12g23980
Os.23262.1.A1_s_at--833--471Chr12:13622816..13622840 (25 bp)
ATCTGAGAAGCATGTTGTGAGGAGC
LOC_Os12g23980
Target Sequence 
AAGTGCTGGCAAGCTTGTGGTGAACGGACCCGTACNTAATGTGGGAGAAGCAAATTCAAGCTACACCGTGGAAANTGATA
TGCCTAGGGAGGTGATGACAAGTGTGTCACCAACAAAGCTAGAATTCNCCAAGATGAAGGAGAAGAAAACATTTTCATTA
AGCTTAAGTTGGGATATTAGCAAAACTAACCATGCCGAGGGAAGCTTCAAGTGGGTATCTGAGAAGCATGTTGTGAGGAG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23262.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis