Browse Element(s) Details


OsAffx.31855.1.S1_at

Description tigr:9640.m02280
TID=OsAffx.31855.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2397011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23920NANA12+13590476..13596565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23930OsAffx.31853.1.S1_at11/1112+13597179..13598474Protein kinase domain containing protein
LOC_Os12g23940OsAffx.19791.1.S1_at11/1112+13600373..13601551Protein kinase domain containing protein, expressed
LOC_Os12g23950OsAffx.19792.1.S1_at11/1112+13607703..13608806Protein kinase domain containing protein
LOC_Os12g23960NANA12+13612803..13613365hypothetical protein
LOC_Os12g23970OsAffx.31855.1.S1_at11/1112+13619303..13619584hypothetical protein
LOC_Os12g23980OsAffx.31856.1.S1_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_s_at11/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23980Os.23262.1.A1_at4/1112+13622645..13624999Subtilase family protein, expressed
LOC_Os12g23990NANA12+13629073..13636238retrotransposon protein, putative, unclassified
LOC_Os12g24010NANA12+13643403..13645335hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31855.1.S1_at--355--9351Chr12:13619339..13619363 (25 bp)
TCGAGAAGGCGCTCACCTTGTCATC
LOC_Os12g23970
OsAffx.31855.1.S1_at--473--471Chr12:13619387..13619411 (25 bp)
ATCTCCGCTGCCATGCGCGCGAGGA
LOC_Os12g23970
OsAffx.31855.1.S1_at--177--4631Chr12:13619405..13619429 (25 bp)
GCGAGGAGCTCGAAGCTTCCAACGA
LOC_Os12g23970
OsAffx.31855.1.S1_at--1084--2691Chr12:13619417..13619441 (25 bp)
AAGCTTCCAACGACCAAGGGCGGCA
LOC_Os12g23970
OsAffx.31855.1.S1_at--734--7651Chr12:13619453..13619477 (25 bp)
GGGAGGCCGCAGTCCTCTCATGATA
LOC_Os12g23970
OsAffx.31855.1.S1_at--237--1151Chr12:13619463..13619487 (25 bp)
AGTCCTCTCATGATACTGACGCAAC
LOC_Os12g23970
OsAffx.31855.1.S1_at--1024--8831Chr12:13619473..13619497 (25 bp)
TGATACTGACGCAACTGCCGCCGTT
LOC_Os12g23970
OsAffx.31855.1.S1_at--124--4511Chr12:13619492..13619516 (25 bp)
GCCGTTGCTGCCTCCACGAAGAGAG
LOC_Os12g23970
OsAffx.31855.1.S1_at--1095--5991Chr12:13619512..13619536 (25 bp)
GAGAGCCACTTGTGCAAAGCTGCAA
LOC_Os12g23970
OsAffx.31855.1.S1_at--1148--4391Chr12:13619516..13619540 (25 bp)
GCCACTTGTGCAAAGCTGCAACTGG
LOC_Os12g23970
OsAffx.31855.1.S1_at--1127--4751Chr12:13619530..13619554 (25 bp)
GCTGCAACTGGAGGTTGCTGCCGCA
LOC_Os12g23970
Target Sequence 
TCGAGAAGGCGCTCACCTTGTCATCCCAAGCTAGCCCTCTCTCCCCCCATCTCCGCTGCCATGCGCGCGAGGAGCTCGAA
GCTTCCAACGACCAAGGGCGGCATAAGGGGTGTCGGGAGGCCGCAGTCCTCTCATGATACTGACGCAACTGCCGCCGTTG
CTGCCTCCACGAAGAGAGCCACTTGTGCAAAGCTGCAACTGGAGGTTGCTGCCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis