Browse Element(s) Details


OsAffx.19790.1.S1_at

Description tigr:9640.m02269
TID=OsAffx.19790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2386011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23830NANA12+13545598..13550560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23840Os.47463.1.S1_x_at4/1112+13552037..13556725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23840Os.14491.2.S1_x_at4/1112+13552037..13556725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23849NANA12+13562606..13563289NA
LOC_Os12g23860OsAffx.19790.1.S1_at11/1112+13569909..13570430hypothetical protein
LOC_Os12g23860Os.39814.1.S1_at1/1112+13569909..13570430hypothetical protein
LOC_Os12g23869OsAffx.16314.1.S1_at1/1112+13574084..13574766hypothetical protein
LOC_Os12g23880OsAffx.10439.1.S1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23880Os.10731.2.A1_at1/1112+13575140..13577488transposon protein, putative, Mutator sub-class
LOC_Os12g23890OsAffx.7680.1.S1_at11/1112+13579956..13580287expressed protein
LOC_Os12g23900OsAffx.7681.1.S1_at11/1112+13584799..13585449hypothetical protein
LOC_Os12g23910NANA12+13587197..13590159retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23920NANA12+13590476..13596565retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19790.1.S1_at--806--1431Chr12:13570197..13570221 (25 bp)
AGAACCTCCGGGGTGTCATCGCTAT
LOC_Os12g23860
OsAffx.19790.1.S1_at--190--10311Chr12:13569966..13570181 (25 bp)
TTTCTTTGGACGCTCGGTTTCACGC
LOC_Os12g23860
OsAffx.19790.1.S1_at--801--10371Chr12:13569965..13570180 (25 bp)
TTCTTTGGACGCTCGGTTTCACGCC
LOC_Os12g23860
OsAffx.19790.1.S1_at--70--10251Chr12:13569962..13570177 (25 bp)
TTTGGACGCTCGGTTTCACGCCGAG
LOC_Os12g23860
OsAffx.19790.1.S1_at--738--8531Chr12:13569960..13570175 (25 bp)
TGGACGCTCGGTTTCACGCCGAGAT
LOC_Os12g23860
OsAffx.19790.1.S1_at--1110--8091Chr12:13569959..13570174 (25 bp)
GGACGCTCGGTTTCACGCCGAGATC
LOC_Os12g23860
OsAffx.19790.1.S1_at--1015--1811Chr12:13569957..13570172 (25 bp)
ACGCTCGGTTTCACGCCGAGATCTA
LOC_Os12g23860
OsAffx.19790.1.S1_at--527--7871Chr12:13569951..13569975 (25 bp)
GGTTTCACGCCGAGATCTACTGCCG
LOC_Os12g23860
OsAffx.19790.1.S1_at--749--10291Chr12:13569949..13569973 (25 bp)
TTTCACGCCGAGATCTACTGCCGTT
LOC_Os12g23860
OsAffx.19790.1.S1_at--15--9691Chr12:13569947..13569971 (25 bp)
TCACGCCGAGATCTACTGCCGTTTG
LOC_Os12g23860
OsAffx.19790.1.S1_at--1152--4151Chr12:13569944..13569968 (25 bp)
CGCCGAGATCTACTGCCGTTTGCCA
LOC_Os12g23860
Target Sequence 
AGAACCTCCGGGGTGTCATCGCTATCTGGACCTCGCCAAGTTTCTTTGGACGCTCGGTTTCACGCCGAGATCTACTGCCG
TTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis