Browse Element(s) Details


OsAffx.31248.2.S1_x_at

Description tigr:9639.m02869
TID=OsAffx.31248.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3159011/11Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g423602/11hypothetical protein
LOC_Os12g267201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31560OsAffx.19105.1.S1_at11/1111+17940840..17942929Leucine Rich Repeat family protein
LOC_Os11g31570Os.7793.1.S1_at11/1111+17945573..17949064expressed protein
LOC_Os11g31579Os.50826.1.S1_at10/1111+17961041..17961332NA
LOC_Os11g31590OsAffx.31248.2.S1_x_at11/1111+17961499..17962926Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g31600OsAffx.7267.1.S1_at10/1111+17967083..17967746hypothetical protein
LOC_Os11g31600OsAffx.7680.1.S1_at1/1111+17967083..17967746hypothetical protein
LOC_Os11g31610OsAffx.31249.1.S1_at1/1111+17971210..17971569hypothetical protein
LOC_Os11g31620Os.24828.1.S1_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.24828.1.S2_at11/1111+17982586..17988121F-box domain containing protein, expressed
LOC_Os11g31620Os.22714.1.A1_at1/1111+17982586..17988121F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31248.2.S1_x_at--36--10671Chr11:17962074..17962098 (25 bp)
TTCCTCGAGTCCTGCGTCGGCGACG
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--550--5151Chr11:17962016..17962040 (25 bp)
GCAACATGGCATCCTTCCGCTACAT
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--1112--4752Chr11:24996499..24996523 (25 bp)
GCTACATCGCCGAGATAGCCGTCTC
LOC_Os11g42360
OsAffx.31248.2.S1_x_at--293--1272Chr11:24996511..24996535 (25 bp)
AGATAGCCGTCTCGGCCAGCTTCGT
LOC_Os11g42360
OsAffx.31248.2.S1_x_at--338--5911Chr11:17961891..17961915 (25 bp)
GAGCTCTGCAACGTCACCAGCCACG
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--961--1711Chr11:17961876..17961900 (25 bp)
ACCAGCCACGGCAAGACGCGCAGGG
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--125--9472Chr12:15659591..15659610 (20 bp)
TCTGGATGCTCGAGGCCAAGCCCGC
LOC_Os12g26720
OsAffx.31248.2.S1_x_at--398--4611Chr11:17961753..17961777 (25 bp)
GCGAGCGGCTACAGGAAGCTGTTCA
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--906--3931Chr11:17961748..17961772 (25 bp)
CGGCTACAGGAAGCTGTTCAAGAAG
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--931--9771Chr11:17961744..17961768 (25 bp)
TACAGGAAGCTGTTCAAGAAGGAGG
LOC_Os11g31590
OsAffx.31248.2.S1_x_at--1149--4071Chr11:17961656..17961680 (25 bp)
CGCGGTTCCCGGTGTCCGTGCTGCT
LOC_Os11g31590
Target Sequence 
TTCCTCGAGTCCTGCGTCGGCGACGAGCCGGGCCTCGCCCCGGCGTTCGGCCTCCTCCGCAACATGGCATCCTTCCGCTA
CATCGCCGAGATAGCCGTCTCGGCCAGCTTCGTCGACCACGTCCTCGCCGCGCTGGGCAGCGACAAGGCCGCCACGCGCA
CGGAGGCCGCCATGGCGCTCGCCGAGCTCTGCAACGTCACCAGCCACGGCAAGACGCGCAGGGACGTCGGCGACGCCATC
CCGCGCCTCATCTGGATGCTCGAGGCCAAGCCCGCCGCCGAGAGGGACGCCGCGGCGAGGGCGCTCGCCGCGCTCGTCGC
GGCGAGCGGCTACAGGAAGCTGTTCAAGAAGGAGGAGCAGGGCATCGTCAATGTCGTCCAGCTGCTCGACCCGAGCACCG
CCCGCGGTGGCGTCGACGCGCGGTTCCCGGTGTCCGTGCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31248.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis