Browse Element(s) Details


OsAffx.29127.1.S1_at

Description tigr:9636.m00958
TID=OsAffx.29127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09970OsAffx.16930.1.S1_at9/118+5755324..5755828hypothetical protein
LOC_Os08g09980OsAffx.5770.1.S1_at11/118+5764586..5765376hypothetical protein
LOC_Os08g09990OsAffx.16931.1.S1_at11/118+5767689..5770093hypothetical protein
LOC_Os08g09990OsAffx.19106.1.S1_at1/118+5767689..5770093hypothetical protein
LOC_Os08g10000OsAffx.29127.1.S1_at11/118+5774462..5774857hypothetical protein
LOC_Os08g10010Os.5295.1.S1_at11/118+5781253..5782786Acyl-desaturase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29127.1.S1_at--125--5651Chr08:5774795..5774819 (25 bp)
GACAGCAGCGGTGCTCGCGAGAGGA
LOC_Os08g10000
OsAffx.29127.1.S1_at--1039--5651Chr08:5774758..5774782 (25 bp)
GACAGTGGCGGCATCATCTCGCGGC
LOC_Os08g10000
OsAffx.29127.1.S1_at--781--4691Chr08:5774751..5774775 (25 bp)
GCGGCATCATCTCGCGGCCAGAATT
LOC_Os08g10000
OsAffx.29127.1.S1_at--25--9611Chr08:5774745..5774769 (25 bp)
TCATCTCGCGGCCAGAATTAGCGAC
LOC_Os08g10000
OsAffx.29127.1.S1_at--1050--9491Chr08:5774742..5774766 (25 bp)
TCTCGCGGCCAGAATTAGCGACGCT
LOC_Os08g10000
OsAffx.29127.1.S1_at--190--4711Chr08:5774738..5774762 (25 bp)
GCGGCCAGAATTAGCGACGCTCAAT
LOC_Os08g10000
OsAffx.29127.1.S1_at--625--9991Chr08:5774517..5774751 (25 bp)
TAGCGACGCTCAATGCAGAGGGCTT
LOC_Os08g10000
OsAffx.29127.1.S1_at--978--5791Chr08:5774513..5774747 (25 bp)
GACGCTCAATGCAGAGGGCTTAAGA
LOC_Os08g10000
OsAffx.29127.1.S1_at--1034--9011Chr08:5774504..5774525 (22 bp)
TGCAGAGGGCTTAAGAATCCATTGT
LOC_Os08g10000
OsAffx.29127.1.S1_at--607--6131Chr08:5774500..5774524 (25 bp)
GAGGGCTTAAGAATCCATTGTGGGT
LOC_Os08g10000
OsAffx.29127.1.S1_at--1101--4891Chr08:5774496..5774520 (25 bp)
GCTTAAGAATCCATTGTGGGTGCCC
LOC_Os08g10000
Target Sequence 
GACAGCAGCGGTGCTCGCGAGAGGAGGAGGCCCCGGCGACAGTGGCGGCATCATCTCGCGGCCAGAATTAGCGACGCTCA
ATGCAGAGGGCTTAAGAATCCATTGTGGGTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis