Browse Element(s) Details


Os.52269.1.S1_at

Description gb:AK065993.1
DB_XREF= gi:32976011
TID=Os.52269.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047L10, full insert sequence.
FL= gb:AK065993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g099109/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein
LOC_Os08g09920Os.40034.1.A1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_x_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920Os.54846.1.S1_s_at11/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09920OsAffx.29124.1.S1_at2/118+5721681..5725679F-box domain containing protein, expressed
LOC_Os08g09930Os.51591.1.S1_at11/118+5728864..5729607expressed protein
LOC_Os08g09940Os.9634.1.S1_at11/118+5740394..5745485GTP-binding protein PTD004, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52269.1.S1_at--912--10231Chr08:5717013..5717037 (25 bp)
TTTGATTACATTCTTCCGGATCTAA
LOC_Os08g09910
Os.52269.1.S1_at--901--1111Chr08:5717112..5717136 (25 bp)
AGTAATGCCTTATAGCTTTCCTCCA
LOC_Os08g09910
Os.52269.1.S1_at--1061--1531Chr08:5717140..5717164 (25 bp)
AGCATGCTCTGTTATTCTACCTCTA
LOC_Os08g09910
Os.52269.1.S1_at--200--1751Chr08:5717158..5717182 (25 bp)
ACCTCTATATTTTTGTTCCGTGTGA
LOC_Os08g09910
Os.52269.1.S1_at--541--1691Chr08:5717198..5717222 (25 bp)
AGCCATTGGCTCTTTGATATTTCTT
LOC_Os08g09910
Os.52269.1.S1_at--349--6491Chr08:5717213..5717237 (25 bp)
GATATTTCTTACAGACCTCCGTAGC
LOC_Os08g09910
Os.52269.1.S1_at--494--7651Chr08:5717284..5717308 (25 bp)
GGGAGTACGTTCTGTAATGCCTATA
LOC_Os08g09910
Os.52269.1.S1_at--1091--1051Chr08:5717404..5717428 (25 bp)
AGGGCCTGATGCAAACAAAGTTCGA
LOC_Os08g09910
Os.52269.1.S1_at--845--2711Chr08:5717433..5717457 (25 bp)
AAGCATACTGCTTACTCATCCAAAG
LOC_Os08g09910
Os.52269.1.S1_at--1117--10331Chr08:5717536..5717560 (25 bp)
TTTAGTATTCTCCTCGATCTGCACA
NONE
Os.52269.1.S1_at--359--2071Chr08:5717568..5717592 (25 bp)
ACTTGAGCATCCACTTTTGATGGGC
NONE
Target Sequence 
TTTGATTACATTCTTCCGGATCTAATTGTTCTTTACTAATTAAACCAAAATTACCTTGTTATTGAATACTATGTTTAAAT
GGTCAAATACAAGCAACAAGTAATGCCTTATAGCTTTCCTCCAGTCAGCATGCTCTGTTATTCTACCTCTATATTTTTGT
TCCGTGTGATAATCTTAAATCATAAGCCATTGGCTCTTTGATATTTCTTACAGACCTCCGTAGCATGAAAATTATAAGGG
AAATGGCCAGGGATGAGCTATGAGAAGCTGGGGAGTACGTTCTGTAATGCCTATAAACACCATGGAAGCAGAGAATTTAT
GCAGACATTCAATTAATTGTTCAAATCAATCTGATGAGTGCAAAAAAAAAAATTCTTTTTATAGATTCTAAGGGCCTGAT
GCAAACAAAGTTCGACTACAAGCATACTGCTTACTCATCCAAAGCTGTGATCGAGCTTACCTGAGAGGTTGAGACGAAGA
ATTTTTGAGTAAAGGAGTAACTATGTAATTATTTAGGTAAATTTTAGTATTCTCCTCGATCTGCACATTCTTCCACTTGA
GCATCCACTTTTGATGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis