Browse Element(s) Details


OsAffx.16928.1.S1_at

Description tigr:9636.m00941
TID=OsAffx.16928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0987011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed
LOC_Os08g09910Os.52269.1.S1_at9/118+5714108..5717477F-box domain containing protein
LOC_Os08g09910Os.54846.1.S1_x_at1/118+5714108..5717477F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16928.1.S1_at--155--10571Chr08:5692236..5692260 (25 bp)
TTCTTCTTCCATAGGGGTGCCTGCC
LOC_Os08g09870
OsAffx.16928.1.S1_at--1156--9171Chr08:5692219..5692243 (25 bp)
TGCCTGCCTCGCTGCCTTCGGATGT
LOC_Os08g09870
OsAffx.16928.1.S1_at--835--3772Chr08:5692177..5692201 (25 bp)
CTCGTCATCCGAAGCCGAGCCGCGA
LOC_Os08g09870
OsAffx.16928.1.S1_at--492--5391Chr08:5692141..5692165 (25 bp)
GAAGCATATGGAGGTGCACGGACCT
LOC_Os08g09870
OsAffx.16928.1.S1_at--618--271Chr08:5692136..5692160 (25 bp)
ATATGGAGGTGCACGGACCTCACCT
LOC_Os08g09870
OsAffx.16928.1.S1_at--231--4171Chr08:5691895..5691919 (25 bp)
CGCCTGCGTGAAGGATTTAGGATCA
LOC_Os08g09870
OsAffx.16928.1.S1_at--599--5091Chr08:5691770..5691794 (25 bp)
GCACGGTTCCAATTTCGCAAAATTT
LOC_Os08g09870
OsAffx.16928.1.S1_at--175--3131Chr08:5691760..5691784 (25 bp)
AATTTCGCAAAATTTCAATGGCACA
LOC_Os08g09870
OsAffx.16928.1.S1_at--822--9711Chr08:5691746..5691770 (25 bp)
TCAATGGCACATCTACGAATACACG
LOC_Os08g09870
OsAffx.16928.1.S1_at--30--8252Chr09:3207320..3207374 (25 bp)
GGCACATCTACGAATACACGAATTG
NONE
OsAffx.16928.1.S1_at--572--331Chr08:5691459..5691752 (25 bp)
ATACACGAATTGTTAATGGAACGGT
LOC_Os08g09870
Target Sequence 
TTCTTCTTCCATAGGGGTGCCTGCCTCGCTGCCTTCGGATGTTCCCACCGCCGCCGCCGCTCGTCATCCGAAGCCGAGCC
GCGACGAGGGAGGAAGAAGCATATGGAGGTGCACGGACCTCACCTTCCTCCCATGGCGCCGCCGTTGGCCGCCGCCGCCG
CCGCGGCCGTATACTCCTCTTCCCCTCTCTTCTCCTCCTCTTCGTCCTGCCCCCTCCCCCACTGCCATCTGCCCCCGAGC
TCCATCTCCCTCCGGCCGTGGCGCCGCTCGACCACCGCAGCCTCCTCCTCCGCCGCTACCGAGTCCGCCGGGAGGCCCCT
TCTTGAGGCGCGCGATCTCGTCGCCTGCGTGAAGGATTTAGGATCAAGAGAGATGGGGAAAAGAGGAGAGGATGGGAAAG
AAGATGAATATGATATGTGGGTCCCACATGCAAATGAGGAAGAGGATAGAAAACGTGACGGCAGTGGCACGGTTCCAATT
TCGCAAAATTTCAATGGCACATCTACGAATACACGAATTGTTAATGGAACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16928.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis