Browse Element(s) Details


Os.28080.1.A1_at

Description gb:AK060371.1
DB_XREF= gi:32970389
TID=Os.28080.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.28080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-204-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-009-B06, full insert sequence.
FL= gb:AK060371.1 gb:AK061018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g098602/11FMN-dependent dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein
LOC_Os08g09850OsAffx.16927.1.S1_at11/118+5682425..5683000hypothetical protein
LOC_Os08g09850OsAffx.21729.1.S1_x_at1/118+5682425..5683000hypothetical protein
LOC_Os08g09860OsAffx.5767.1.S1_at9/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09860Os.28080.1.A1_at2/118+5686782..5689079FMN-dependent dehydrogenase family protein, expressed
LOC_Os08g09870OsAffx.16928.1.S1_at11/118+5690312..5692276expressed protein
LOC_Os08g09870OsAffx.17566.1.S1_at1/118+5690312..5692276expressed protein
LOC_Os08g09880NANA8+5693915..5696437hAT family dimerisation domain containing protein
LOC_Os08g09890Os.54326.1.S1_at10/118+5700073..5702702expressed protein
LOC_Os08g09900Os.26946.1.S1_at11/118+5707601..5712816hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008891molecular_functionglycolate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28080.1.A1_at--1009--2551Chr08:5687796..5687820 (25 bp)
AACTGGGCCTTGAATCTGTTTCTTC
LOC_Os08g09860
Os.28080.1.A1_at--593--10551Chr08:5687815..5687927 (25 bp)
TTCTTCCAGCTATATATGCAGCCGT
LOC_Os08g09860
Os.28080.1.A1_at--838--2451Chr08:5689096..5689120 (25 bp)
AACAATGCTTGCTACCACTTGGTTC
NONE
Os.28080.1.A1_at--966--6691Chr08:5689117..5689141 (25 bp)
GTTCCTTGCATAATTTTCAGGCGGC
NONE
Os.28080.1.A1_at--687--10511Chr08:5689132..5689156 (25 bp)
TTCAGGCGGCTAGACTTCAATTATG
NONE
Os.28080.1.A1_at--1043--3131NONE
AATTATGGGTAATGCGCCTCGGTTG
NONE
Os.28080.1.A1_at--1089--9431Chr08:5690781..5690805 (25 bp)
TCGGTTGAGCCCATAGTCTGGCGTA
NONE
Os.28080.1.A1_at--992--8351Chr08:5690800..5690824 (25 bp)
GGCGTAGAACTATTGCCACCAATGT
NONE
Os.28080.1.A1_at--1153--1711Chr08:5690910..5690934 (25 bp)
ACCAGCCTCTGTAGTCGTATTGATT
NONE
Os.28080.1.A1_at--821--3171Chr08:5690939..5690963 (25 bp)
AATTGTCTTATGCTATATCCGATGT
NONE
Os.28080.1.A1_at--339--10151Chr08:5690954..5690978 (25 bp)
TATCCGATGTATGTGCCTGTTTAAT
NONE
Target Sequence 
AACTGGGCCTTGAATCTGTTTCTTCCAGCTATATATGCAGCCGTACAGGTACAGGAATGTGGTTGAGCAGTTCGTCAGAA
GAGCCGAGAGAGCTGGGTTCAAGGCGATTGCACTGACCGTGGACACTCCGTGGCTGGGACGTAGGGAGGCTGACATCAAG
AACAGGTTTATATACTAATAGAACGGTGATTCCAAACAATGCTTGCTACCACTTGGTTCCTTGCATAATTTTCAGGCGGC
TAGACTTCAATTATGGGTAATGCGCCTCGGTTGAGCCCATAGTCTGGCGTAGAACTATTGCCACCAATGTGTATATACAA
TCTTTTTAGAAAATGAGATAAACCTGGCCTCTACATCCAACCGAATGTACACGACCAAATGTGTATGTACAGTCTACCAG
CCTCTGTAGTCGTATTGATTTTGAAATTGTCTTATGCTATATCCGATGTATGTGCCTGTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28080.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis