Browse Element(s) Details


Os.55100.1.S1_at

Description gb:AK107490.1
DB_XREF= gi:32992699
TID=Os.55100.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55100 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D01, full insert sequence.
FL= gb:AK107490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4083011/11expressed protein
LOC_Os04g042101/11hypothetical protein
LOC_Os08g098001/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55100.1.S1_at--109--1591Chr07:24465444..24465468 (25 bp)
AGCTGCCGGAGCTTCCAAAGCCCGA
LOC_Os07g40830
Os.55100.1.S1_at--972--7651Chr07:24465244..24465268 (25 bp)
GGGTTCCCAAAGCACGGGCTGCCAC
LOC_Os07g40830
Os.55100.1.S1_at--524--2711Chr07:24465142..24465166 (25 bp)
AAGCAGCCATGATCGTACATACACA
LOC_Os07g40830
Os.55100.1.S1_at--1074--6391Chr07:24465132..24465156 (25 bp)
GATCGTACATACACACACAGTATTT
LOC_Os07g40830
Os.55100.1.S1_at--410--8552Chr07:24465094..24465118 (25 bp)
TGGATTATAAAAAACCTGGCCTCTA
LOC_Os07g40830
Os.55100.1.S1_at--397--2615Chr04:1947237..1947256 (20 bp)
AACCTGGCCTCTACACCTTGTGAGG
LOC_Os04g04210
Os.55100.1.S1_at--216--4474Chr02:6647115..6647139 (25 bp)
GCCTCTACACCTTGTGAGGATGTAC
NONE
Os.55100.1.S1_at--306--6177Chr11:18843576..18843597 (22 bp)
GAGGATGTACACAGCCTAAAAGTAA
NONE
Os.55100.1.S1_at--845--7011Chr07:24465040..24465064 (25 bp)
GTAACAAACACGAGTACACAAGACT
LOC_Os07g40830
Os.55100.1.S1_at--478--3211Chr07:24465022..24465046 (25 bp)
CAAGACTATAAGACTCTCCCGTTAC
LOC_Os07g40830
Os.55100.1.S1_at--200--9795Chr07:4345403..4345427 (25 bp)
TAAGACTCTCCCGTTACATGGGTAA
NONE
Target Sequence 
AGCTGCCGGAGCTTCCAAAGCCCGAGCTGCCGCCGCCGCTCCCTGAGCTTCCTCGCCCCGTCGTGCCGGAGCTGCCGCCG
CACCCCGCCGTGCCGGAGCTGCCACCGTTGCCCAAGCCTGAGCTGCCGCCGCACCCCGTCGTGCCGGAGATGCTGCCGCA
CCCCGTCGTGCCGGAGCTGCCGCACTACCCGGCCGTGCCGGGGTTCCCAAAGCACGGGCTGCCACCGAAGCCTGAGCTGC
CGCCATTGCCCACGGCGGAGCTGCCGCCGGAGCACGAGGTTCACGACCCGGAGCCGGAGACCAAGCAGCCATGATCGTAC
ATACACACACAGTATTTTTTTTTTAGACAATGGATTATAAAAAACCTGGCCTCTACACCTTGTGAGGATGTACACAGCCT
AAAAGTAACAAACACGAGTACACAAGACTATAAGACTCTCCCGTTACATGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis