Browse Element(s) Details


Os.11225.1.S1_at

Description gb:AK068696.1
DB_XREF= gi:32978713
TID=Os.11225.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11225 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full insert sequence.
FL= gb:AK068696.1 gb:AK106010.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4085011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0005618cellular_componentcell wall
GO:0005515molecular_functionprotein binding
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11225.1.S1_at--77--2371Chr07:24468816..24468840 (25 bp)
AAAGCCTGAGGTGCCACACCCTGTG
LOC_Os07g40850
Os.11225.1.S1_at--85--551Chr07:24468760..24468784 (25 bp)
ATCCCACCGTGCCAGAGCATGAACA
LOC_Os07g40850
Os.11225.1.S1_at--1139--5991Chr07:24468722..24468746 (25 bp)
GAGAGCCATTATCCCGAGAAGCCAT
LOC_Os07g40850
Os.11225.1.S1_at--226--8431Chr07:24468673..24468697 (25 bp)
GGCCGGTCGTATCGTATCCTGAAAT
LOC_Os07g40850
Os.11225.1.S1_at--104--571Chr07:24468658..24468682 (25 bp)
ATCCTGAAATTACTACGTGTTGCTG
LOC_Os07g40850
Os.11225.1.S1_at--343--2031Chr07:24468647..24468671 (25 bp)
ACTACGTGTTGCTGTATGTGTGTAT
LOC_Os07g40850
Os.11225.1.S1_at--435--9791Chr07:24468613..24468637 (25 bp)
TAAGCTTTGATCGATGTTTGCCTAA
LOC_Os07g40850
Os.11225.1.S1_at--94--8872Chr11:16396582..16397079 (25 bp)
TGATGATCTAGCTAGCTGTGTGAGT
NONE
Os.11225.1.S1_at--125--10411Chr07:24468519..24468543 (25 bp)
TTTTGTGGCAGCTTTCTTTGTTCTT
LOC_Os07g40850
Os.11225.1.S1_at--539--6071Chr07:24468490..24468514 (25 bp)
GAGTTATTGTGTTATCGTATGTGCT
LOC_Os07g40850
Os.11225.1.S1_at--321--7351Chr07:24468454..24468478 (25 bp)
GTGCACACACGATCTACACTTGTAT
LOC_Os07g40850
Target Sequence 
AAAGCCTGAGGTGCCACACCCTGTGGTGCCGGAGTTGCCGAAGCCCGAGGTGCCGCATCCCACCGTGCCAGAGCATGAAC
AGCCGCCCAAGCCTGAGAGCCATTATCCCGAGAAGCCATGATCGATCCAGAGATCGATCGATCGGCCGGTCGTATCGTAT
CCTGAAATTACTACGTGTTGCTGTATGTGTGTATGTTCATGTGTAAGCTTTGATCGATGTTTGCCTAAGATATTTTCAGT
GATGATCTAGCTAGCTGTGTGAGTGTGTGAGATGATGTACGTTGTTGTTGTGTTTTGTTTTGTGGCAGCTTTCTTTGTTC
TTGGATGAGTTATTGTGTTATCGTATGTGCTGATTTATGTGTGTGCACACACGATCTACACTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis