Browse Element(s) Details


OsAffx.16662.1.S1_at

Description tigr:9635.m04082
TID=OsAffx.16662.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4084011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40800Os.48371.1.S1_at9/117+24449939..24453879expressed protein
LOC_Os07g40800Os.57429.1.S1_s_at1/117+24449939..24453879expressed protein
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16662.1.S1_at--693--1691Chr07:24467321..24467345 (25 bp)
AGCCATCAGGGAGGACGGTGTCTGG
LOC_Os07g40840
OsAffx.16662.1.S1_at--65--1931Chr07:24467307..24467331 (25 bp)
ACGGTGTCTGGTGTGAGTCTTCCTT
LOC_Os07g40840
OsAffx.16662.1.S1_at--782--7451Chr07:24467304..24467328 (25 bp)
GTGTCTGGTGTGAGTCTTCCTTCAA
LOC_Os07g40840
OsAffx.16662.1.S1_at--186--8611Chr07:24467299..24467323 (25 bp)
TGGTGTGAGTCTTCCTTCAAGGCTG
LOC_Os07g40840
OsAffx.16662.1.S1_at--788--6091Chr07:24467297..24467317 (21 bp)
GAGTCTTCCTTCAAGGCTGGTGCCA
LOC_Os07g40840
OsAffx.16662.1.S1_at--623--911Chr07:24467129..24467276 (25 bp)
AGGCTGGTGCCAAGTCTGATACTCG
LOC_Os07g40840
OsAffx.16662.1.S1_at--536--7271Chr07:24467123..24467147 (25 bp)
GTGCCAAGTCTGATACTCGTGGTAT
LOC_Os07g40840
OsAffx.16662.1.S1_at--1071--1991Chr07:24467109..24467133 (25 bp)
ACTCGTGGTATCATGGCTGGTATGC
LOC_Os07g40840
OsAffx.16662.1.S1_at--963--7851Chr07:24467103..24467127 (25 bp)
GGTATCATGGCTGGTATGCACAGAT
LOC_Os07g40840
OsAffx.16662.1.S1_at--437--8351Chr07:24467095..24467119 (25 bp)
GGCTGGTATGCACAGATATCAGGCA
LOC_Os07g40840
OsAffx.16662.1.S1_at--89--251Chr07:24467080..24467104 (25 bp)
ATATCAGGCATGGTACCTCGGGCAC
LOC_Os07g40840
Target Sequence 
AGCCATCAGGGAGGACGGTGTCTGGTGTGAGTCTTCCTTCAAGGCTGGTGCCAAGTCTGATACTCGTGGTATCATGGCTG
GTATGCACAGATATCAGGCATGGTACCTCGGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis