Browse Element(s) Details


Os.17414.1.S1_at

Description gb:AK099418.1
DB_XREF= gi:32984627
TID=Os.17414.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.17414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013006J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013006J17, full insert sequence.
FL= gb:AK099418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4093011/11WD-repeat protein 12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009908biological_processflower development
GO:0009965biological_processleaf morphogenesis
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17414.1.S1_at--96--10091Chr07:24492883..24492904 (22 bp)
TATGGTATCTGGGAAGGCCTTGAAT
LOC_Os07g40930
Os.17414.1.S1_at--759--7751Chr07:24492843..24492867 (25 bp)
GGTGAGAGCTCTTCACTAATCGCTG
LOC_Os07g40930
Os.17414.1.S1_at--594--2011Chr07:24492829..24492853 (25 bp)
ACTAATCGCTGCTGGTGGCTCTGAC
LOC_Os07g40930
Os.17414.1.S1_at--1012--9391Chr07:24492705..24492805 (25 bp)
TCGTAAACCTGGAACTCTAGCTCCA
LOC_Os07g40930
Os.17414.1.S1_at--319--10391Chr07:24492671..24492695 (25 bp)
TTTTCCTCCCATAAAAGCTGGATCA
LOC_Os07g40930
Os.17414.1.S1_at--984--9011Chr07:24492641..24492665 (25 bp)
TGCAAATGGCATCCAAGTTCGTGGT
LOC_Os07g40930
Os.17414.1.S1_at--770--6711Chr07:24492625..24492649 (25 bp)
GTTCGTGGTTTCATTTGGTATCATC
LOC_Os07g40930
Os.17414.1.S1_at--933--9771Chr07:24492469..24492592 (25 bp)
TAAGGACAGCATGGCCACTGGCTTC
LOC_Os07g40930
Os.17414.1.S1_at--917--3331Chr07:24492454..24492478 (25 bp)
CACTGGCTTCTGTGGAGTCACACAA
LOC_Os07g40930
Os.17414.1.S1_at--50--291Chr07:24492267..24492291 (25 bp)
ATAGTGTGATGATGTTCCCTCGTTT
LOC_Os07g40930
Os.17414.1.S1_at--205--7971Chr07:24492181..24492205 (25 bp)
GGATCTAGTATCTAACTGCTGTTCA
LOC_Os07g40930
Target Sequence 
TATGGTATCTGGGAAGGCCTTGAATTGCTTGGNATTGTGGTGGTGAGAGCTCTTCACTAATCGCTGCTGGTGGCTCTGAC
CCTGTCTTGAGGGTATGGGNACCCTCGTAAACCTGGAACTCTAGCTCCANATNTTTTCAGTTTTCCTCCCATAAAAGCTG
GATCAGTGCTTGCAAATGGCATCCAAGTTCGTGGTTTCATTTGGTATCATCTTCATTTGATGGGAAAGTAATGTTGTGGG
ATCTAAGGACAGCATGGCCACTGGCTTCTGTGGAGTCACACAAAGACAAGGTTTTATGTGCGGACTGGTGGAAAGGGGAT
AGCGTCATCAGTGGGGGAGCTGATTCCAAGCTGTGTATAGCTTCAGGGATTGAAATAGTGTGATGATGTTCCCTCGTTTT
TGACCAGGTTTAAACATTTTTCATCTCAATTGATTGAAAAATATCCTGATTTGATATCCAGGATCTAGTATCTAACTGCT
GTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis