Browse Element(s) Details


Os.46187.1.S1_at

Description gb:AK111970.1
DB_XREF= gi:37988633
TID=Os.46187.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C09, full insert sequence.
FL= gb:AK111913.1 gb:AK112017.1 gb:AK111970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4094011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46187.1.S1_at--557--7671Chr07:24506443..24506467 (25 bp)
GGGATTGCACCTAAGAGCCGGGCTA
LOC_Os07g40940
Os.46187.1.S1_at--161--9151Chr07:24506500..24506524 (25 bp)
TGCGATCGCATGAGGGTTGCACCCT
LOC_Os07g40940
Os.46187.1.S1_at--879--2371Chr07:24506616..24506640 (25 bp)
AAACCCTGATCCTTTCTGAAGATGT
LOC_Os07g40940
Os.46187.1.S1_at--876--8991Chr07:24506632..24506656 (25 bp)
TGAAGATGTCATCCCATCCGAAAAC
LOC_Os07g40940
Os.46187.1.S1_at--160--5531Chr07:24506651..24506675 (25 bp)
GAAAACCCACTATTGCCTGCCAATT
LOC_Os07g40940
Os.46187.1.S1_at--558--4471Chr07:24506665..24506689 (25 bp)
GCCTGCCAATTCTTGTTTGGTGTCG
LOC_Os07g40940
Os.46187.1.S1_at--910--6991Chr07:24506717..24506741 (25 bp)
GTACTCCCTTTTCTTATGTCGTGTA
LOC_Os07g40940
Os.46187.1.S1_at--578--731Chr07:24506732..24506756 (25 bp)
ATGTCGTGTACTCTGTAATTTGGTA
LOC_Os07g40940
Os.46187.1.S1_at--272--10091Chr07:24506758..24506782 (25 bp)
TAGGATGTCTGTCTCTTTCATGCAA
LOC_Os07g40940
Os.46187.1.S1_at--302--10331Chr07:24506773..24506797 (25 bp)
TTTCATGCAAGGACTCCCACTATTT
LOC_Os07g40940
Os.46187.1.S1_at--598--10411Chr07:24506919..24506943 (25 bp)
TTATCATCAAGTTGCTCATCCCTGA
LOC_Os07g40940
Target Sequence 
GGGATTGCACCTAAGAGCCGGGCTAGCCACCTTCTGCNCCGTGCTCCTCTNGTTCGTTGCGATCGCATGAGGGTTGCACC
CTTGAAGCAACACTCATTTTCGCNGATTGAAAGAACCCGATTTCGGTGGTTGNAGGAGCAATGTGATCTGTGAAAAGAAA
AAAAAAATGAACAGAAACCCTGATCCTTTCTGAAGATGTCATCCCATCCGAAAACCCACTATTGCCTGCCAATTCTTGTT
TGGTGTCGATGGGTGTTTGTGTGGGGTGAGTTTCTGTACTCCCTTTTCTTATGTCGTGTACTCTGTAATTTGGTAGTAGG
ATGTCTGTCTCTTTCATGCAAGGACTCCCACTATTTCTTTTTCTTTTTCCCATCTTTATTATCTTGTAAATCTAGGGAAA
ACCAGTAGGTAGGCTCAAGGTTGGTTGGAATGAGAAGGTTGTTGTTGGGACAATGCCNATCTTAAGGCTGTTATCAACTT
ATCATCAAGTTGCTCATCCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis