Browse Element(s) Details


OsAffx.28850.1.S1_at

Description tigr:9635.m04099
TID=OsAffx.28850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4100011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41030NANA7+24541477..24543148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g41050OsAffx.28851.1.S1_s_at11/117+24553475..24555029NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28850.1.S1_at--923--651Chr07:24530577..24530601 (25 bp)
ATGCACAGTGGGTGGCGGCCAGCAA
LOC_Os07g41000
OsAffx.28850.1.S1_at--134--8491Chr07:24530565..24530589 (25 bp)
TGGCGGCCAGCAAGGAGACAGGAAA
LOC_Os07g41000
OsAffx.28850.1.S1_at--370--11Chr07:24530548..24530572 (25 bp)
ACAGGAAAAGGGTGGTGATTGGCAA
LOC_Os07g41000
OsAffx.28850.1.S1_at--425--10751Chr07:24530530..24530554 (25 bp)
TTGGCAAGGATTGCGGACAACGAAG
LOC_Os07g41000
OsAffx.28850.1.S1_at--333--10711Chr07:24530520..24530544 (25 bp)
TTGCGGACAACGAAGAGAAGCTCAC
LOC_Os07g41000
OsAffx.28850.1.S1_at--352--2571Chr07:24530512..24530536 (25 bp)
AACGAAGAGAAGCTCACGGTGCCCC
LOC_Os07g41000
OsAffx.28850.1.S1_at--938--5351Chr07:24530509..24530533 (25 bp)
GAAGAGAAGCTCACGGTGCCCCTTC
LOC_Os07g41000
OsAffx.28850.1.S1_at--1152--9271Chr07:24530499..24530523 (25 bp)
TCACGGTGCCCCTTCCGAAGTTGAG
LOC_Os07g41000
OsAffx.28850.1.S1_at--786--7271Chr07:24530494..24530518 (25 bp)
GTGCCCCTTCCGAAGTTGAGGATGA
LOC_Os07g41000
OsAffx.28850.1.S1_at--624--4531Chr07:24530492..24530516 (25 bp)
GCCCCTTCCGAAGTTGAGGATGACG
LOC_Os07g41000
OsAffx.28850.1.S1_at--274--4171Chr07:24530490..24530514 (25 bp)
CCCTTCCGAAGTTGAGGATGACGAC
LOC_Os07g41000
Target Sequence 
ATGCACAGTGGGTGGCGGCCAGCAAGGAGACAGGAAAAGGGTGGTGATTGGCAAGGATTGCGGACAACGAAGAGAAGCTC
ACGGTGCCCCTTCCGAAGTTGAGGATGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis