Browse Element(s) Details


OsAffx.16664.1.S1_at

Description tigr:9635.m04093
TID=OsAffx.16664.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C2H2 type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4095011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein
LOC_Os07g40950OsAffx.16664.1.S1_at11/117+24511041..24512024Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40974Os.12089.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974OsAffx.16668.2.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.20078.1.S1_at11/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40974Os.52782.1.S1_at1/117+24513622..24526300NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g41000OsAffx.28850.1.S1_at11/117+24530448..24530651hypothetical protein
LOC_Os07g41014OsAffx.21870.3.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.1.S1_s_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.21870.2.S1_x_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.22670.2.S1_at11/117+24532679..24538416Glycosyl hydrolases family 17 protein
LOC_Os07g41014OsAffx.30361.1.S1_at1/117+24532679..24538416Glycosyl hydrolases family 17 protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009643biological_processphotosynthetic acclimation
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16664.1.S1_at--1091--3511Chr07:24511608..24511632 (25 bp)
CATGAGGGTCCATCACGCCGAGAAC
LOC_Os07g40950
OsAffx.16664.1.S1_at--800--2171Chr07:24511517..24511541 (25 bp)
ACACGCGGAGCATCACGATCAGGTG
LOC_Os07g40950
OsAffx.16664.1.S1_at--74--9651Chr07:24511499..24511523 (25 bp)
TCAGGTGGACCGTACAAGTGCAAGT
LOC_Os07g40950
OsAffx.16664.1.S1_at--733--7911Chr07:24511469..24511493 (25 bp)
GGTTGCATCATGGAGTACGAGTCGC
LOC_Os07g40950
OsAffx.16664.1.S1_at--514--2491Chr07:24511409..24511433 (25 bp)
AACAGGGACAAGATGGCCACCGCCA
LOC_Os07g40950
OsAffx.16664.1.S1_at--214--2651Chr07:24511364..24511388 (25 bp)
AAGCCAAAGGGCAAGCACCCGTGCA
LOC_Os07g40950
OsAffx.16664.1.S1_at--16--5091Chr07:24511350..24511374 (25 bp)
GCACCCGTGCAACGTATGCGGCAAA
LOC_Os07g40950
OsAffx.16664.1.S1_at--563--1331Chr07:24511326..24511350 (25 bp)
AGAGTACCCGACAGGAGTGGCGCTC
LOC_Os07g40950
OsAffx.16664.1.S1_at--765--931Chr07:24511277..24511301 (25 bp)
AGGAAGGACCTTGATCTTACCCTCT
LOC_Os07g40950
OsAffx.16664.1.S1_at--541--8551Chr07:24511143..24511167 (25 bp)
TGGAGGAGAGCTAGTGCCGACAACT
LOC_Os07g40950
OsAffx.16664.1.S1_at--999--9291Chr07:24511119..24511143 (25 bp)
TCCGCCAACCGGAGCTAGGAGAAAT
LOC_Os07g40950
Target Sequence 
CATGAGGGTCCATCACGCCGAGAACGAGAAGGAGCCGATGTCGCTGCCGCCGCAGGTGGCGGCGCCCGTTCATCCCCAGG
CTCGGCTACCCACACGCGGAGCATCACGATCAGGTGGACCGTACAAGTGCAAGTACGAGGGTTGCATCATGGAGTACGAG
TCGCACCAGGGGCTAGGTGGCCATGTCGCTGGCCACATCAACAGGGACAAGATGGCCACCGCCAGCGGCAGTGGCGGCGC
CGGCAAGCCAAAGGGCAAGCACCCGTGCAACGTATGCGGCAAAGAGTACCCGACAGGAGTGGCGCTCGGTGGCCACAAGA
GGAAGCACTACAGGAAGGACCTTGATCTTACCCTCTCCCTCGCACCGCCCGGACAACTCGCCGCGCCGCCTACACCTACA
CCTGCTCCTGCTCCAGCGGCCATCGCCGCGGTGGAGGCAGAAGCGGAGGTGGCTGAAGATGGAGATGGAGGAGAGCTAGT
GCCGACAACTCCGCCAACCGGAGCTAGGAGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis