Browse Element(s) Details


Os.49602.1.A1_at

Description gb:AK105907.1
DB_XREF= gi:32991116
TID=Os.49602.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-204-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-204-G04, full insert sequence.
FL= gb:AK105907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4090011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40810OsAffx.16660.1.S1_at11/117+24454435..24458215NB-ARC domain containing protein
LOC_Os07g40820OsAffx.16653.3.A1_at11/117+24459197..24460741pentatricopeptide, putative
LOC_Os07g40830Os.55100.1.S1_at11/117+24465011..24465690expressed protein
LOC_Os07g40830OsAffx.14586.1.S1_s_at1/117+24465011..24465690expressed protein
LOC_Os07g40840OsAffx.16662.1.S1_at11/117+24467050..24467383hypothetical protein
LOC_Os07g40850Os.11225.1.S1_at11/117+24468413..24469419expressed protein
LOC_Os07g40860Os.13996.1.S1_at11/117+24470742..24471884expressed protein
LOC_Os07g40870Os.52211.1.S1_at11/117+24475685..24476458expressed protein
LOC_Os07g40880OsAffx.16663.1.S1_s_at8/117+24477650..24479221hypothetical protein
LOC_Os07g40880OsAffx.16663.1.S1_x_at4/117+24477650..24479221hypothetical protein
LOC_Os07g40890Os.6669.1.S1_at11/117+24479558..24480255expressed protein
LOC_Os07g40900Os.49602.1.A1_at11/117+24481792..24483225retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g40910Os.51383.1.S1_at11/117+24486126..24486754expressed protein
LOC_Os07g40920OsAffx.28849.1.S1_at11/117+24489281..24490537APO protein 3, mitochondrial precursor, putative, expressed
LOC_Os07g40930Os.17414.1.S1_at11/117+24492068..24495865WD-repeat protein 12, putative, expressed
LOC_Os07g40940Os.46187.1.S1_at11/117+24503471..24506958expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49602.1.A1_at--202--9711Chr07:24482302..24482326 (25 bp)
TAATGGGCCACCGAAACCTGACCAG
LOC_Os07g40900
Os.49602.1.A1_at--734--8951Chr07:24482218..24482242 (25 bp)
TGACATGCCGCCAAAACCTGATCAA
LOC_Os07g40900
Os.49602.1.A1_at--1034--2631Chr07:24482195..24482219 (25 bp)
AACCACCACAGCCAGAGTACTATGA
LOC_Os07g40900
Os.49602.1.A1_at--416--6671Chr07:24482134..24482158 (25 bp)
GTTGCCGAACGGTGAGATCCCATTT
LOC_Os07g40900
Os.49602.1.A1_at--1104--6371Chr07:24482119..24482143 (25 bp)
GATCCCATTTTCACCATAGCCGGAA
LOC_Os07g40900
Os.49602.1.A1_at--1008--1591Chr07:24482070..24482094 (25 bp)
AGCTGCCGGTCATTCCTGAGGTGCA
LOC_Os07g40900
Os.49602.1.A1_at--1149--6591Chr07:24481992..24482016 (25 bp)
GATTGATTCGTCCAGATTCTACATT
LOC_Os07g40900
Os.49602.1.A1_at--1037--8671Chr07:24481957..24481981 (25 bp)
TGTGTATTTCTTTCCTGTATCAACG
LOC_Os07g40900
Os.49602.1.A1_at--327--8771Chr07:24481942..24481966 (25 bp)
TGTATCAACGGCGTGCATGCCATGT
LOC_Os07g40900
Os.49602.1.A1_at--402--591Chr07:24481926..24481950 (25 bp)
ATGCCATGTCTGTCGTCCGTGTAGA
LOC_Os07g40900
Os.49602.1.A1_at--917--1571Chr07:24481868..24481892 (25 bp)
AGCTCACATATCTCTTCTCTGAGGG
LOC_Os07g40900
Target Sequence 
TAATGGGCCACCGAAACCTGACCAGCCGCCACAACCTAATCCTAATGGGCCATCAAAGCCTGACCAACCGCCAAGACCCA
ATCCTGACATGCCGCCAAAACCTGATCAACCACCACAGCCAGAGTACTATGAACAACCACCAAAGCCGGATGCACCCCAG
ATGCCACCGTTGCCGAACGGTGAGATCCCATTTTCACCATAGCCGGAAGAAAGCGCCGGCCACTGAAGCCGGAGCTGCCG
GTCATTCCTGAGGTGCACCTCCTGGTAACGGGAGGGCAAAAACCATGATGACCACCAAGAGGTCCATTCAGATTGATTCG
TCCAGATTCTACATTTGGTTTCATTTGTGTATTTCTTTCCTGTATCAACGGCGTGCATGCCATGTCTGTCGTCCGTGTAG
ATGTGTGTTACTTGCTGAGTTTGTTGCTATGAGCAGCTCACATATCTCTTCTCTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49602.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis