Browse Element(s) Details


OsAffx.15141.2.S1_at

Description tigr:9636.m00933
TID=OsAffx.15141.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0979011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09780Os.53513.1.S1_at11/118+5646337..5649305expressed protein
LOC_Os08g09790OsAffx.15141.3.S1_s_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790OsAffx.15141.2.S1_at11/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.50851.1.S1_at6/118+5652383..5656315hypothetical protein
LOC_Os08g09790Os.8747.1.S2_x_at1/118+5652383..5656315hypothetical protein
LOC_Os08g09800Os.55100.1.S1_at1/118+5657234..5663062hAT family dimerisation domain containing protein
LOC_Os08g09810NANA8+5666127..5670105hAT family dimerisation domain containing protein
LOC_Os08g09820OsAffx.28855.3.S1_x_at11/118+5671209..5673331hypothetical protein
LOC_Os08g09830Os.49650.1.S1_at11/118+5675116..5676744Speckle-type POZ protein, putative, expressed
LOC_Os08g09840NANA8+5677595..5680461hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15141.2.S1_at--39--6511Chr08:5655050..5655074 (25 bp)
GATAGTGACGCGAATACCTGTGAAT
LOC_Os08g09790
OsAffx.15141.2.S1_at--417--2071Chr08:5655205..5655229 (25 bp)
ACTTGATGAAGTTCTTGGTGGCCAT
LOC_Os08g09790
OsAffx.15141.2.S1_at--831--6731Chr08:5655233..5655257 (25 bp)
GTTCTTCACATCCTATCAAATGCTG
LOC_Os08g09790
OsAffx.15141.2.S1_at--853--1371Chr08:5655446..5655470 (25 bp)
AGAGCGCTGAAAACTTGCCCAACTT
LOC_Os08g09790
OsAffx.15141.2.S1_at--205--811Chr08:5655509..5655533 (25 bp)
ATGGGTGCTGACTTTGATCCACTAG
LOC_Os08g09790
OsAffx.15141.2.S1_at--1058--6351Chr08:5655524..5655548 (25 bp)
GATCCACTAGTTACATTCTTGCAGC
LOC_Os08g09790
OsAffx.15141.2.S1_at--749--111Chr08:5655538..5655562 (25 bp)
ATTCTTGCAGCATTCACCTAATCTG
LOC_Os08g09790
OsAffx.15141.2.S1_at--181--8911Chr08:5655577..5656073 (25 bp)
TGAACTTAAATTGGGCTTCCCACCA
LOC_Os08g09790
OsAffx.15141.2.S1_at--823--10631Chr08:5656065..5656089 (25 bp)
TTCCCACCAGACCACAGTAACGTGA
LOC_Os08g09790
OsAffx.15141.2.S1_at--1008--2671Chr08:5656114..5656206 (25 bp)
AAGCTGCACCGGTGAGTTCTGAAGT
LOC_Os08g09790
OsAffx.15141.2.S1_at--456--471Chr08:5656214..5656238 (25 bp)
ATCTGCGCTGATCATGCTGGAAGTA
LOC_Os08g09790
Target Sequence 
GATAGTGACGCGAATACCTGTGAATACAGTGAGATTGCAGATGACTATGATGATGAAAAACAACGTCAAGAGCATTGTGA
GGGGCATAATCCGATTGATGATTATGATGATGAAAATCAACATGAAGAGCATGGTGAGGAACATAATCAAATTGGACTTG
ATGAAGTTCTTGGTGGCCATAATGTTCTTCACATCCTATCAAATGCTGAAATTTTGGAGCTATTAGCTGATGGTGGAGAG
GTGATTCTTAATAGAGCGCTGAAAACTTGCCCAACTTTTAGAAACCTGAAGACGTTGTCCCTTGGTGAATGGTGTATGGG
TGCTGACTTTGATCCACTAGTTACATTCTTGCAGCATTCACCTAATCTGGAGAGGCTTTTCCTTGAACTTAAATTGGGCT
TCCCACCAGACCACAGTAACGTGAAGCTAGAGGGAGGCTGTCGTGAAGAAGCTGCACCGGTGAGTTCTGAAGTGCAGAGC
ATCTGCGCTGATCATGCTGGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15141.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis