Browse Element(s) Details


OsAffx.24649.2.S1_x_at

Description tigr:9630.m03797
TID=OsAffx.24649.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3947010/11Cyclin, N-terminal domain containing protein
LOC_Os02g394304/11Cyclin, N-terminal domain containing protein
LOC_Os03g142204/11hypothetical protein
LOC_Os07g410802/11hydrolase, alpha/beta fold family protein
LOC_Os02g392401/11Cyclin, N-terminal domain containing protein
LOC_Os02g392301/11Cyclin, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39420Os.55732.1.S1_at4/112+23778892..23780064Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_s_at11/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.2.S1_x_at4/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_x_at1/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39440NANA2+23785790..23786943retrotransposon protein, putative, unclassified
LOC_Os02g39450NANA2+23789800..23790681hypothetical protein
LOC_Os02g39460OsAffx.30298.1.S1_x_at1/112+23796208..23796775hypothetical protein
LOC_Os02g39470OsAffx.24649.5.S1_s_at11/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.2.S1_x_at10/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.10096.1.S1_x_at2/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.5.S1_x_at1/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39480OsAffx.12414.1.S1_at10/112+23815372..23820241Protein phosphatase 2C containing protein
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24649.2.S1_x_at--414--7214Chr02:23700763..23700787 (25 bp)
GTCGCTGCTGACGTACGGGTTCCAC
LOC_Os02g39240
OsAffx.24649.2.S1_x_at--307--432Chr02:23806096..23806120 (25 bp)
ATCTTCCTGGCGAGGCTGGACGTGC
LOC_Os02g39470
OsAffx.24649.2.S1_x_at--840--452Chr02:23806047..23806071 (25 bp)
ATCTCGCGGAGCTGACAGGGTACAA
LOC_Os02g39470
OsAffx.24649.2.S1_x_at--753--8952Chr02:23806035..23806059 (25 bp)
TGACAGGGTACAAGGCCATCGACTT
LOC_Os02g39470
OsAffx.24649.2.S1_x_at--416--2071NONE
ACTTGATGGGCTGCGGGTATTATCG
NONE
OsAffx.24649.2.S1_x_at--338--6794Chr03:7693844..7693868 (25 bp)
GTTTATCAGTATCTAACTCACCCTC
NONE
OsAffx.24649.2.S1_x_at--31--5411Chr02:23804645..23804669 (25 bp)
GAAGCTGCTCAAGCCACGGGACACG
LOC_Os02g39470
OsAffx.24649.2.S1_x_at--766--9672Chr03:7694066..7694090 (25 bp)
TCACCAGGGTGCTGCAGGCGAAGAA
LOC_Os03g14220
OsAffx.24649.2.S1_x_at--121--4572Chr03:7694147..7694171 (25 bp)
GCGCCGCTGGAGTTGGGATCAATTC
LOC_Os03g14220
OsAffx.24649.2.S1_x_at--953--7952Chr03:7694162..7694186 (25 bp)
GGATCAATTCCAGCGGCGACGACCA
LOC_Os03g14220
OsAffx.24649.2.S1_x_at--958--1814Chr06:7095219..7095242 (24 bp)
ACGCGGCCTATTAGGCCTGCACATT
NONE
Target Sequence 
GTCGCTGCTGACGTACGGGTTCCACCGCTACCTGCCGTCCATTGTGGCGGCGTCGTCGATCTTCCTGGCGAGGCTGGACG
TGCTGGGGCATGAGCCATGGAGCCAGGATCTCGCGGAGCTGACAGGGTACAAGGCCATCGACTTGATGGGCTGCGGGTAT
TATCGTAGTTTATCAGTATCTAACTCACCCTCTCCCTGCGCCAACCCGGGCAACTACATCGCGCTCGTCACCCTCCGCGT
CGCCGAGGAGATGCGGCCGCCGCTGCCACCGCCGGCGCGGGCCGAGCGGCACGGCACGGGCACGGTGCGGGTGACGCGGG
TGAAGCTGCTCAAGCCACGGGACACGCTGCTTCTTGGCCAGGCGTACCGCCTCATCACCGTCGACGAGGTCACCAGGGTG
CTGCAGGCGAAGAAGGAGGAGAAGTCGAGGAGGGCGGCGGCGCAGCATCACCTGGAATCCAAGCCCGCCGGCGCCGCTGG
AGTTGGGATCAATTCCAGCGGCGACGACCACACGCGGCCTATTAGGCCTGCACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24649.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis