Browse Element(s) Details


OsAffx.24649.5.S1_x_at

Description tigr:9630.m03774
TID=OsAffx.24649.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3924011/11Cyclin, N-terminal domain containing protein
LOC_Os02g394701/11Cyclin, N-terminal domain containing protein
LOC_Os02g394301/11Cyclin, N-terminal domain containing protein
LOC_Os02g392301/11Cyclin, C-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein
LOC_Os02g39260Os.55732.1.S1_at11/112+23705021..23706577Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g39270OsAffx.12407.1.S1_at11/112+23708748..23710071hypothetical protein
LOC_Os02g39280OsAffx.12408.1.S1_at11/112+23714568..23720311C2 domain containing protein, expressed
LOC_Os02g39290Os.35443.1.S1_at11/112+23720369..23723256TRAF-type zinc finger family protein, expressed
LOC_Os02g39300Os.6741.1.S1_at11/112+23723421..23728528LUC7 N_terminus domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24649.5.S1_x_at--848--7192Chr02:23700613..23700637 (25 bp)
GTCGTGCATGGAGACCGAGATCCTC
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--826--5651Chr02:23700647..23700671 (25 bp)
GACTACAACCTAAGCGGCCCGACGG
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--853--7591Chr02:23700848..23700872 (25 bp)
GGGCATGAGCCGTGGAGCAGGGATC
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--809--8071Chr02:23700861..23700885 (25 bp)
GGAGCAGGGATCTCGCCGAGCTCAC
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--877--5931Chr02:23700862..23700886 (25 bp)
GAGCAGGGATCTCGCCGAGCTCACC
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--1140--1051Chr02:23700866..23700890 (25 bp)
AGGGATCTCGCCGAGCTCACCGGGT
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--997--7651Chr02:23700867..23700891 (25 bp)
GGGATCTCGCCGAGCTCACCGGGTA
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--841--451Chr02:23700870..23700894 (25 bp)
ATCTCGCCGAGCTCACCGGGTACGA
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--904--3791Chr02:23700872..23700896 (25 bp)
CTCGCCGAGCTCACCGGGTACGAGG
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--867--9131Chr02:23700914..23700938 (25 bp)
TGCGTCTGCGACATGTACAGTCAAA
LOC_Os02g39240
OsAffx.24649.5.S1_x_at--1048--7013Chr02:23700928..23700952 (25 bp)
GTACAGTCAAATCGCATGTCCTCGC
LOC_Os02g39240
Target Sequence 
GTCGTGCATGGAGACCGAGATCCTCGCCGCGCTCGACTACAACCTAAGCGGCCCGACGGCGTCCACGTTCGTGCAGCACT
TCACGAGGTACTACGGCGACGGAAAAGAAGAGGAGCTGTTGAAGGAGGCGGCGCATCGGTTCACCGACGGGTCGCTGCTG
ACGTACGGGTTCCACCGCTACCTGCCGTCCGTGGTGGCGGCGTCGGCGATCTTCCTGGCGAGGCTGCACGTGCTGGGGCA
TGAGCCGTGGAGCAGGGATCTCGCCGAGCTCACCGGGTACGAGGCCATCGACTTGATGGGCTGCGTCTGCGACATGTACA
GTCAAATCGCATGTCCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24649.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis