Browse Element(s) Details


OsAffx.2913.1.S1_at

Description tigr:9630.m03771
TID=OsAffx.2913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3921011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39160Os.20084.1.S1_at11/112+23647436..236533054-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase family protein, expressed
LOC_Os02g39170OsAffx.24644.1.S1_at11/112+23656750..23658590GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39180Os.10189.1.S1_at10/112+23658882..23661264expressed protein
LOC_Os02g39190OsAffx.24646.1.S1_at11/112+23667975..23670671hypothetical protein
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2913.1.S1_at--555--5771Chr02:23678010..23678034 (25 bp)
GACGATCTCATCGACATCTTTGGCG
LOC_Os02g39210
OsAffx.2913.1.S1_at--322--7091Chr02:23678085..23678109 (25 bp)
GTCAAGCCAGAAGCCGACGAGTTCG
LOC_Os02g39210
OsAffx.2913.1.S1_at--105--5631Chr02:23678124..23678148 (25 bp)
GACACAATCGACAAGTCGCCAGGAA
LOC_Os02g39210
OsAffx.2913.1.S1_at--787--2851Chr02:23678136..23678160 (25 bp)
AAGTCGCCAGGAAATCCTAGCTCAA
LOC_Os02g39210
OsAffx.2913.1.S1_at--50--2611Chr02:23678184..23678208 (25 bp)
AACGCCTCCGGATCATCAAGCACAT
LOC_Os02g39210
OsAffx.2913.1.S1_at--851--7191Chr02:23678307..23678331 (25 bp)
GTCGTCGAAGCTGTGGCCACCAAAC
LOC_Os02g39210
OsAffx.2913.1.S1_at--870--8651Chr02:23678318..23678342 (25 bp)
TGTGGCCACCAAACCATTGGAGCCG
LOC_Os02g39210
OsAffx.2913.1.S1_at--312--4131Chr02:23678350..23678374 (25 bp)
CGCAGGTCGCCGAACAAGCTTACAA
LOC_Os02g39210
OsAffx.2913.1.S1_at--829--1671Chr02:23678397..23678421 (25 bp)
AGCCGGAGAGAAGCAGCTCCAGCTC
LOC_Os02g39210
OsAffx.2913.1.S1_at--826--691Chr02:23678439..23678463 (25 bp)
ATGAGCGAGCTCATCGCCAGAGCGC
LOC_Os02g39210
OsAffx.2913.1.S1_at--715--3751Chr02:23678448..23678472 (25 bp)
CTCATCGCCAGAGCGCAAGCGGAGA
LOC_Os02g39210
Target Sequence 
GACGATCTCATCGACATCTTTGGCGGCGACTCTCCTCTACCGGCGCACGAGGATCTCCTCGACGCGTCGCCGCTCGTCAA
GCCAGAAGCCGACGAGTTCGTCGACATCGACGGCGACACAATCGACAAGTCGCCAGGAAATCCTAGCTCAACCACCACCG
GTTCGAGCAGCGGCAACGCCTCCGGATCATCAAGCACATCCGCCTCCTCTTCAGGCAGCGACTCCGACTCCGACGGCGGC
GGCGTCGGCGACACCGCGAGCAGCAACCCAAACACAGCAAACCATCTCCCCGTCGTCGTCGTCGAAGCTGTGGCCACCAA
ACCATTGGAGCCGCAGCCGCCGCAGGTCGCCGAACAAGCTTACAAGATGGGGGAGAAGCTGACCCGGAGCCGGAGAGAAG
CAGCTCCAGCTCCGGCTCCGGCCGGTCGGATGAGCGAGCTCATCGCCAGAGCGCAAGCGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis