Browse Element(s) Details


Os.20084.1.S1_at

Description gb:AK120769.1
DB_XREF= gi:37990392
TID=Os.20084.1
CNT=29
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.20084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23493 isoprenoid biosynthesis-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008D09, full insert sequence.
FL= gb:AK105762.1 gb:AK120769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3916011/114-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39130OsAffx.24242.2.S1_at8/112+23628750..23629819transposon protein, putative, Pong sub-class
LOC_Os02g39130Os.31929.11.S1_x_at1/112+23628750..23629819transposon protein, putative, Pong sub-class
LOC_Os02g39140Os.49337.1.S1_at11/112+23637586..23645647bHLH transcription factor GBOF-1, putative, expressed
LOC_Os02g39140OsAffx.13489.1.S1_at1/112+23637586..23645647bHLH transcription factor GBOF-1, putative, expressed
LOC_Os02g39150OsAffx.24650.1.S1_s_at11/112+23646114..23647130hypothetical protein
LOC_Os02g39150OsAffx.24650.1.S1_x_at9/112+23646114..23647130hypothetical protein
LOC_Os02g39160Os.20084.1.S1_at11/112+23647436..236533054-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase family protein, expressed
LOC_Os02g39170OsAffx.24644.1.S1_at11/112+23656750..23658590GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39180Os.10189.1.S1_at10/112+23658882..23661264expressed protein
LOC_Os02g39190OsAffx.24646.1.S1_at11/112+23667975..23670671hypothetical protein
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009617biological_processresponse to bacteria
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0046429molecular_function4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20084.1.S1_at--622--1931Chr02:23648325..23648347 (23 bp)
ACGGAATATGTCTCTTGTCCTTCTT
LOC_Os02g39160
Os.20084.1.S1_at--194--8151Chr02:23648294..23648318 (25 bp)
GGACACTCTTTGACCTCCAAGAAGT
LOC_Os02g39160
Os.20084.1.S1_at--154--911Chr02:23648143..23648257 (25 bp)
AGGCGTCTCTATTGCTATCATGGGT
LOC_Os02g39160
Os.20084.1.S1_at--946--7291Chr02:23648063..23648087 (25 bp)
GTGCTCCTGGGAAGATCGACCTTTA
LOC_Os02g39160
Os.20084.1.S1_at--526--9371Chr02:23648053..23648072 (20 bp)
TCGACCTTTATGTTGGCAAGACCGT
LOC_Os02g39160
Os.20084.1.S1_at--410--4411Chr02:23647766..23647790 (25 bp)
GCCACTGACGCCTTGATTCAGTTAA
LOC_Os02g39160
Os.20084.1.S1_at--514--851Chr02:23647732..23647756 (25 bp)
ATGGCCGTTGGGTGGATCCTCCTGT
LOC_Os02g39160
Os.20084.1.S1_at--1114--6071Chr02:23647703..23647727 (25 bp)
GAGTAGGCCGTAGCATGTAGTTCAT
LOC_Os02g39160
Os.20084.1.S1_at--37--6951Chr02:23647687..23647711 (25 bp)
GTAGTTCATATATGTACTCCTCCAT
LOC_Os02g39160
Os.20084.1.S1_at--659--931Chr02:23647645..23647669 (25 bp)
AGGCACATTGTATTGTATCCACGGA
LOC_Os02g39160
Os.20084.1.S1_at--770--9011Chr02:23647563..23647587 (25 bp)
TGCAACTTTGTAACACCCTCGTGAA
LOC_Os02g39160
Target Sequence 
ACGGAATATGTCTCTTGTCCTTCTTGTGGGCGGACACTCTTTGACCTCCAAGAAGTCAGTGCTCAGATTAGAGAGAAGAC
CTCTCATCTGCCAGGCGTCTCTATTGCTATCATGGGTTGCATTGTCAATGGGCCAGGGGAGATGGCCGATGCTGATTTCG
GATACGTTGGAGGTGCTCCTGGGAAGATCGACCTTTATGTTGGCAAGACCGTCGTGCAACGGGGCATTGCAATGGAGGGG
GCCACTGACGCCTTGATTCAGTTAATCAAGGACCATGGCCGTTGGGTGGATCCTCCTGTTGAGGAGTAGGCCGTAGCATG
TAGTTCATATATGTACTCCTCCATAAACAATGTTGTAGCTGAGGCACATTGTATTGTATCCACGGAGTACATAAATACAC
GTTCTGTACATCAGTTTAGAAATAAAGTAGGAATAGGGGTGGCTGCAACTTTGTAACACCCTCGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20084.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis