Browse Element(s) Details


Os.21852.1.S1_at

Description gb:AK069982.1
DB_XREF= gi:32980006
TID=Os.21852.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034J11, full insert sequence.
FL= gb:AK069982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3920011/11nucleotide-sugar transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39150OsAffx.24650.1.S1_s_at11/112+23646114..23647130hypothetical protein
LOC_Os02g39150OsAffx.24650.1.S1_x_at9/112+23646114..23647130hypothetical protein
LOC_Os02g39160Os.20084.1.S1_at11/112+23647436..236533054-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase family protein, expressed
LOC_Os02g39170OsAffx.24644.1.S1_at11/112+23656750..23658590GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39180Os.10189.1.S1_at10/112+23658882..23661264expressed protein
LOC_Os02g39190OsAffx.24646.1.S1_at11/112+23667975..23670671hypothetical protein
LOC_Os02g39200Os.21852.1.S1_at11/112+23671476..23676789nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g39210OsAffx.2913.1.S1_at11/112+23677452..23678525hypothetical protein
LOC_Os02g39220OsAffx.24649.1.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39220OsAffx.24649.3.S1_at10/112+23682716..23692312transposon protein, putative, unclassified
LOC_Os02g39230OsAffx.24649.4.S1_at11/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.2.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39230OsAffx.24649.5.S1_x_at1/112+23694091..23695761Cyclin, C-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_s_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.5.S1_x_at11/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39240OsAffx.24649.2.S1_x_at1/112+23699789..23700991Cyclin, N-terminal domain containing protein
LOC_Os02g39250OsAffx.24648.1.S1_at11/112+23701742..23703321hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015780biological_processnucleotide-sugar transport
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005456molecular_functionCMP-sialic acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21852.1.S1_at--864--7591Chr02:23675381..23675405 (25 bp)
GGGCATATCAGTTGTGTTTATTTCA
LOC_Os02g39200
Os.21852.1.S1_at--966--6811Chr02:23675396..23675499 (25 bp)
GTTTATTTCAATGCACCAGTTCTTC
LOC_Os02g39200
Os.21852.1.S1_at--961--9511Chr02:23675498..23675522 (25 bp)
TCTCTCCACTCGCTAAAGCCAAAGA
LOC_Os02g39200
Os.21852.1.S1_at--117--5251Chr02:23675562..23675780 (25 bp)
GAATCATCGGTCATCTGAATCTTCT
LOC_Os02g39200
Os.21852.1.S1_at--1035--6351Chr02:23675898..23675919 (22 bp)
GATGCCAGCCATAGGATTGGAACTG
LOC_Os02g39200
Os.21852.1.S1_at--699--10411Chr02:23676443..23676467 (25 bp)
TTCTTTTTGCCATCCAACTTGGAGG
LOC_Os02g39200
Os.21852.1.S1_at--1051--511Chr02:23676535..23676559 (25 bp)
ATCGATGTATTTTTCCCCTTTGTCA
LOC_Os02g39200
Os.21852.1.S1_at--1029--1611Chr02:23676593..23676617 (25 bp)
AGCTGTGGCCTAACGAGTGTGGCAC
LOC_Os02g39200
Os.21852.1.S1_at--965--8231Chr02:23676633..23676657 (25 bp)
GGCAAATTCCACATGAATCCCCAGA
LOC_Os02g39200
Os.21852.1.S1_at--51--9011Chr02:23676646..23676670 (25 bp)
TGAATCCCCAGATACGATACTAGTA
LOC_Os02g39200
Os.21852.1.S1_at--708--8511Chr02:23676732..23676756 (25 bp)
TGGAACTTTTGTACTATCACACTGG
LOC_Os02g39200
Target Sequence 
GGGCATATCAGTTGTGTTTATTTCAATGCACCAGTTCTTCTCTCCACTCGCTAAAGCCAAAGATGACAAACCAGCTGAAT
TGTTAGAGTTGGAAGATACACAGAATCATCGGTCATCTGAATCTTCTTTTGTAAATATGACTGCTGGCGCTGCTGAAGAT
GCCAGCCATAGGATTGGAACTGATGAGAGGCAACCACTATTGCCAACATGAAGTATTTTTTTGAGGTAGTGTAGAGGACA
ATTCTTTTTGCCATCCAACTTGGAGGCAGCAGAGTTTATATAGCGTGGCGAGTGAAATAAACTATTGTACACTGTAAAGG
CAAAGAAAGAAACATCGATGTATTTTTCCCCTTTGTCATTTTTATTATCTTTTGTGATAGGGAGGGTTGTCAGCTGTGGC
CTAACGAGTGTGGCACAACATTTTTTGGATAGGCAAATTCCACATGAATCCCCAGATACGATACTAGTATAAAGCAATTT
TTTCCCTGGATATGTATACTCAAATGTATCAATGAGTTACTGTTGTTATATGGAACTTTTGTACTATCACACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis