Browse Element(s) Details


OsAffx.24650.1.S1_s_at

Description tigr:9630.m03763
TID=OsAffx.24650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3959011/11GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g3915011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24650.1.S1_s_at--292--8072Chr02:23646317..23646341 (25 bp)
GGAGCACACCGTGGCGCCTCCCTAC
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--1050--8632Chr02:23646982..23647006 (25 bp)
TGGGTTGCGCGCCGAGCTACCTGGC
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--132--4652Chr02:23647032..23647056 (25 bp)
GCGTACGACGGGAACGGGTGCCTCG
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--474--7792Chr02:23647048..23647072 (25 bp)
GGTGCCTCGTGGGTCTCAACCTGTT
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--582--9172Chr02:23647050..23647074 (25 bp)
TGCCTCGTGGGTCTCAACCTGTTCG
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--456--7492Chr02:23647056..23647080 (25 bp)
GTGGGTCTCAACCTGTTCGCGCAGA
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--1113--7692Chr02:23647058..23647082 (25 bp)
GGGTCTCAACCTGTTCGCGCAGATG
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--1087--7152Chr02:23647060..23647084 (25 bp)
GTCTCAACCTGTTCGCGCAGATGCA
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--386--2632Chr02:23647065..23647089 (25 bp)
AACCTGTTCGCGCAGATGCACAACG
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--135--1772Chr02:23647066..23647090 (25 bp)
ACCTGTTCGCGCAGATGCACAACGT
LOC_Os02g39150
OsAffx.24650.1.S1_s_at--138--8812Chr02:23647069..23647093 (25 bp)
TGTTCGCGCAGATGCACAACGTGCT
LOC_Os02g39150
Target Sequence 
GGAGCACACCGTGGCGCCTCCCTACAGGTGGTGCGGTCGCGTGGTGAGCGCGGCGAGGGAGGTGCTCGAGATGAGCGCGA
CGCGGGTGGTGATCCCGGGCAACTTCCCGCTGGGTTGCGCGCCGAGCTACCTGGCGGCGGTGGACGAGACGGAGCGCGCG
GCGTACGACGGGAACGGGTGCCTCGTGGGTCTCAACCTGTTCGCGCAGATGCACAACGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24650.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis