Browse Element(s) Details


OsAffx.2917.1.S1_s_at

Description tigr:9630.m03815
TID=OsAffx.2917.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3962011/11stress-induced protein OZI1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006950biological_processresponse to stress
GO:0009618biological_processresponse to pathogenic bacteria
GO:0010193biological_processresponse to ozone
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2917.1.S1_s_at--549--2091Chr02:23898358..23898382 (25 bp)
ACATCATCGGATCAGTGGCTGCATC
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--1162--3951Chr02:23898365..23898389 (25 bp)
CGGATCAGTGGCTGCATCCTTCGCA
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--651--10611Chr02:23898384..23898408 (25 bp)
TTCGCATTCGCCTATGTCTGCGAGA
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--687--7171Chr02:23898399..23898423 (25 bp)
GTCTGCGAGATCTACATCGCGGAAG
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--172--5791Chr02:23898756..23898780 (25 bp)
GACGACTCGGACCATGGCGACTGAC
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--732--5551Chr02:23898938..23898962 (25 bp)
GAAAGCCAATATTGTTGCGCGCGTG
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--330--6691Chr02:23898951..23898975 (25 bp)
GTTGCGCGCGTGTGCTGATTAAGCC
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--948--6531Chr02:23898967..23898991 (25 bp)
GATTAAGCCCGTGCACAATTCACCT
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--360--3151Chr02:23898983..23899007 (25 bp)
AATTCACCTCCTGTTTCAGACTTTC
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--194--6751Chr02:23899049..23899073 (25 bp)
GTTAATTCCCGGTGAGAAATCAGCT
LOC_Os02g39620
OsAffx.2917.1.S1_s_at--744--5591Chr02:23899064..23899088 (25 bp)
GAAATCAGCTCGAACCGCACGGTTA
LOC_Os02g39620
Target Sequence 
ACATCATCGGATCAGTGGCTGCATCCTTCGCATTCGCCTATGTCTGCGAGATCTACATCGCGGAAGGAAAGCTTCTTGGA
GGCACGACGACTCGGACCATGGCGACTGACGAGTGGGGGAAGGAGACGGACAAGAAGTTCCAGGCGTGGCCGCGGACGGC
CGGGCCGCCGGTGGTGATGAACCCCGTCAGGCGCCAGAACTTCATCGTCAAGTCGTCTGAATAAATCTTCTTCATCAGCC
CTCCCTAGCATTCTCTCGGGGAAGAAAGAAAGCCAATATTGTTGCGCGCGTGTGCTGATTAAGCCCGTGCACAATTCACC
TCCTGTTTCAGACTTTCAGTTAAAGCAAACTAGCATGTATTTTTGCTGTAATTTTTGTGTTAATTCCCGGTGAGAAATCA
GCTCGAACCGCACGGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2917.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis