Browse Element(s) Details


Os.53306.1.S1_at

Description gb:AK071922.1
DB_XREF= gi:32981945
TID=Os.53306.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072M01, full insert sequence.
FL= gb:AK099756.1 gb:AK071922.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3956011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53306.1.S1_at--193--6891Chr02:23871960..23871984 (25 bp)
GTATTTGCATTTGGTCTCATTCTTT
LOC_Os02g39560
Os.53306.1.S1_at--1118--8991Chr02:23871734..23871758 (25 bp)
TGAAGGAACTCATGCTTTCCACCCA
LOC_Os02g39560
Os.53306.1.S1_at--458--7671Chr02:23871671..23871695 (25 bp)
GGGTATGAGACCACCGTTCAAGAAC
LOC_Os02g39560
Os.53306.1.S1_at--25--991Chr02:23871096..23871120 (25 bp)
AGGAGTGCTGGGATCCAACACCTTC
LOC_Os02g39560
Os.53306.1.S1_at--637--9431Chr02:23871073..23871097 (25 bp)
TCGGTCAGGCCGACGTTCGAAGAGA
LOC_Os02g39560
Os.53306.1.S1_at--172--5371Chr02:23871055..23871079 (25 bp)
GAAGAGATAATCGTACGCCTGAACA
LOC_Os02g39560
Os.53306.1.S1_at--912--6491Chr02:23871029..23871053 (25 bp)
GATATCCACGAGTTTTACTAAGCAG
LOC_Os02g39560
Os.53306.1.S1_at--323--1351Chr02:23870836..23870860 (25 bp)
AGAGATAGCCTGGTTGCCGTCAAGA
LOC_Os02g39560
Os.53306.1.S1_at--1011--191Chr02:23870812..23870836 (25 bp)
ATTTCCGCCCTTTTTGCATATGTGA
LOC_Os02g39560
Os.53306.1.S1_at--675--3371Chr02:23870696..23870720 (25 bp)
CAGCCCGCTTTTACTTTCTTATGAA
LOC_Os02g39560
Os.53306.1.S1_at--100--10391Chr02:23870639..23870663 (25 bp)
TTTTCTGAACGTTCAACGCTGCTCG
LOC_Os02g39560
Target Sequence 
GTATTTGCATTTGGTCTCATTCTTTATGAGATGATTGAAGGAACTCATGCTTTCCACCCAAAACCACCGGAGGAGGCGGC
GAAAATGATTTGTTTGGAGGGTATGAGACCACCGTTCAAGAACAAACCCAAATACTATCCTGATGATTTGAGAGAGCTTA
TACAGGAGTGCTGGGATCCAACACCTTCGGTCAGGCCGACGTTCGAAGAGATAATCGTACGCCTGAACAAGATATCCACG
AGTTTTACTAAGCAGACTCGGTGGAGAGACACTTTTAAGTTACCATGGAAACAAGCTTCAGAGAGATAGCCTGGTTGCCG
TCAAGATTTCCGCCCTTTTTGCATATGTGAGTAAACACGGTGAAAATTGTATCGAGTTGTCGAGGAGATAGTGGTCATTT
TTCACGTTTTTGTATTTCCAAAAAATATTTGTAACTATAATCAGCCCGCTTTTACTTTCTTATGAATTATATCATTTTTA
ACTGGAATAATGTGTTAATTTTCTGAACGTTCAACGCTGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis