Browse Element(s) Details


Os.6744.1.S1_at

Description gb:AK120150.1
DB_XREF= gi:37989773
TID=Os.6744.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6744 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029L08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029L08, full insert sequence.
FL= gb:AK120150.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3953011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed
LOC_Os02g39550Os.15749.1.S1_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39550Os.15749.1.S2_at11/112+23860580..23869000calcium-binding mitochondrial protein, putative, expressed
LOC_Os02g39560Os.53306.1.S1_at11/112+23870626..23875833Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6744.1.S1_at--732--3591Chr02:23850996..23851020 (25 bp)
CATTCTGCCAACAGGATATCCATTG
LOC_Os02g39530
Os.6744.1.S1_at--916--6832Chr06:18944776..18944845 (24 bp)
GTTTCTACCAGAAATGACATGATGC
NONE
Os.6744.1.S1_at--1047--6111Chr02:23850881..23850905 (25 bp)
GAGTGGTTAGATTAATTCATGGGAT
LOC_Os02g39530
Os.6744.1.S1_at--704--1291Chr02:23850764..23850788 (25 bp)
AGATGACTCTGCTGCCTCATATTCG
LOC_Os02g39530
Os.6744.1.S1_at--559--9111Chr02:23850755..23850779 (25 bp)
TGCTGCCTCATATTCGACAAATTGG
LOC_Os02g39530
Os.6744.1.S1_at--428--9851Chr02:23850270..23850294 (25 bp)
TACAAGAGTGATACCACCTCAGTTA
LOC_Os02g39530
Os.6744.1.S1_at--1065--411Chr02:23850227..23850251 (25 bp)
ATCATCTTTCAGAAGCCGAGCCAAC
LOC_Os02g39530
Os.6744.1.S1_at--109--4091Chr02:23850211..23850235 (25 bp)
CGAGCCAACATTGCTACTCTTGAAA
LOC_Os02g39530
Os.6744.1.S1_at--787--7051Chr02:23850107..23850131 (25 bp)
GTGCCGTTTTGGTGATTTGCGACAT
LOC_Os02g39530
Os.6744.1.S1_at--941--491Chr02:23850070..23850094 (25 bp)
ATCGGTCATGATTTATGTTACATAG
LOC_Os02g39530
Os.6744.1.S1_at--976--1431Chr02:23850047..23850071 (25 bp)
AGAAGAGACTGTACATGCGAGACCT
LOC_Os02g39530
Target Sequence 
CATTCTGCCAACAGGATATCCATTGGAATGATATACTTTTTATCAAGATTGCAAATGTTTCTACCAGAAATGACATGATG
CAGATATATAGATGATGTACATGCTAATAATTGATGAGTGGTTAGATTAATTCATGGGATTTGTTGTGTTGGTCCAGTTC
AACGAAGAAGGTTGATAAGGTCATGGAGGAAATGAAGCCTATAATTATTTTATCATTGCTTGGTGGTGTTTCAGATGACT
CTGCTGCCTCATATTCGACAAATTGGACATTGAAGCAGGTGANAGGAGAAACTCATACAAGAGTGATACCACCTCAGTTA
CTGCCAAAAGATCAGAAAATCATCTTTCAGAAGCCGAGCCAACATTGCTACTCTTGAAAAACNCATNTATTTCTACTTTT
TTTTTGTGATATTTGTATCCCAAAACCTATATTTAGACTATATCATGGTGTGTATTTTGTGCCGTTTTGGTGATTTGCGA
CATTTTTTTTTCTCTATCGGTCATGATTTATGTTACATAGAAGAGACTGTACATGCGAGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6744.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis