Browse Element(s) Details


Os.56104.1.A1_at

Description gb:AK109261.1
DB_XREF= gi:32994470
TID=Os.56104.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-185-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-185-B01, full insert sequence.
FL= gb:AK109261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3949010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39470OsAffx.24649.5.S1_s_at11/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.2.S1_x_at10/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.10096.1.S1_x_at2/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.5.S1_x_at1/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39480OsAffx.12414.1.S1_at10/112+23815372..23820241Protein phosphatase 2C containing protein
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56104.1.A1_at--1041--4911NONE
GCTTGGCCTCCTAAATAAGGTGAGG
NONE
Os.56104.1.A1_at--762--3071Chr02:23823875..23823896 (22 bp)
AATAAGGTGAGGGACCCGTCGCTGC
LOC_Os02g39490
Os.56104.1.A1_at--237--4171Chr02:23823518..23823542 (25 bp)
CCCACCGGCAAGTTCTTCAAGTGGT
LOC_Os02g39490
Os.56104.1.A1_at--950--9531Chr02:23823481..23823505 (25 bp)
TCTACTCCAAGCTGTGAAACTGTCA
LOC_Os02g39490
Os.56104.1.A1_at--305--5551Chr02:23823466..23823490 (25 bp)
GAAACTGTCAGCGACATGCTAGGCT
LOC_Os02g39490
Os.56104.1.A1_at--215--1651Chr02:23823457..23823481 (25 bp)
AGCGACATGCTAGGCTCCTGAGCTC
LOC_Os02g39490
Os.56104.1.A1_at--565--3811Chr02:23823443..23823467 (25 bp)
CTCCTGAGCTCCTCATGGTAATATG
LOC_Os02g39490
Os.56104.1.A1_at--722--6671Chr02:23823376..23823400 (25 bp)
GTTGCTTAAGCATCAACCCTGTCAG
LOC_Os02g39490
Os.56104.1.A1_at--595--2711Chr02:23823369..23823393 (25 bp)
AAGCATCAACCCTGTCAGTTGACAG
LOC_Os02g39490
Os.56104.1.A1_at--789--1171Chr02:23823333..23823357 (25 bp)
AGTACCACTATATGGCAGTATGCGT
LOC_Os02g39490
Os.56104.1.A1_at--994--271Chr02:23823324..23823348 (25 bp)
ATATGGCAGTATGCGTCTTTGGTGT
LOC_Os02g39490
Target Sequence 
GCTTGGCCTCCTAAATAAGGTGAGGGACCCGTCGCTGCGGAGCATGCTGCTGGACGAGGCGTCGCTGACGGAGGGGAAGA
TCGAGCGGATGGCGTCGCGGTTCCTGGCCGAGGTGAAGGACGGGACGTGGTCGGCGCCGGGGCGCGGGTGGCCGGCGGTG
TGGACGGACTACGCGGTGTCCAAGCTCGCGCTCAACGCCTACTCGCGCGTCCTCGCCGCCCGCCTCGCCCGAGGCGGCGA
CCGCGTCGCCGTCAACTGCTTCTGCCCCGGGTTCACGCGCACCGACATGACCCGCGGCTGGGGCACCCGCACCGCCGAGG
AGGCCGGCCGCGTCGCCGCCGGCCTCGCGCTGCTCCCGCCCGGCGACCTCCCCACCGGCAAGTTCTTCAAGTGGTGCACG
CCCCAGCTCTACTCCAAGCTGTGAAACTGTCAGCGACATGCTAGGCTCCTGAGCTCCTCATGGTAATATGAGAGAAAACT
ACTGCAAATTTAGAGAGGAAAATTAAGCATGAGTTGCTTAAGCATCAACCCTGTCAGTTGACAGTGAAAATATATAGTAC
CACTATATGGCAGTATGCGTCTTTGGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56104.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis