Browse Element(s) Details


OsAffx.2916.1.S1_at

Description tigr:9630.m03800
TID=OsAffx.2916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3950011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39470OsAffx.24649.5.S1_s_at11/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.2.S1_x_at10/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.10096.1.S1_x_at2/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.5.S1_x_at1/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39480OsAffx.12414.1.S1_at10/112+23815372..23820241Protein phosphatase 2C containing protein
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39530Os.6744.1.S1_at11/112+23850009..23852622expressed protein
LOC_Os02g39530Os.49433.1.S1_x_at1/112+23850009..23852622expressed protein
LOC_Os02g39540Os.16480.1.S1_at11/112+23853970..23858723transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2916.1.S1_at--157--1931Chr02:23834521..23834545 (25 bp)
ACGGTGGCAGTGGACTTGGCCTCTC
LOC_Os02g39500
OsAffx.2916.1.S1_at--569--9111Chr02:23834467..23834491 (25 bp)
TGCGTCTTCCTCGCGAAGGTGGCCG
LOC_Os02g39500
OsAffx.2916.1.S1_at--228--7551Chr02:23834449..23834473 (25 bp)
GTGGCCGCTGACTGGAGCTTTGCAA
LOC_Os02g39500
OsAffx.2916.1.S1_at--718--4191Chr02:23834445..23834469 (25 bp)
CCGCTGACTGGAGCTTTGCAAGTCG
LOC_Os02g39500
OsAffx.2916.1.S1_at--338--7971Chr02:23834411..23834435 (25 bp)
GGATCTGGCTGTGGGCGACGATTGC
LOC_Os02g39500
OsAffx.2916.1.S1_at--854--7591Chr02:23834377..23834401 (25 bp)
GGGCATGGCGCGATGGCAACGAGTC
LOC_Os02g39500
OsAffx.2916.1.S1_at--1013--6231Chr02:23834366..23834390 (25 bp)
GATGGCAACGAGTCGCGACAATGGT
LOC_Os02g39500
OsAffx.2916.1.S1_at--768--1871Chr02:23834359..23834383 (25 bp)
ACGAGTCGCGACAATGGTGTGGCAA
LOC_Os02g39500
OsAffx.2916.1.S1_at--1086--7471Chr02:23834343..23834367 (25 bp)
GTGTGGCAAGGGTCGCCAGATCCAG
LOC_Os02g39500
OsAffx.2916.1.S1_at--19--6371Chr02:23834325..23834349 (25 bp)
GATCCAGTGGCGGTGTCTCGTCGAG
LOC_Os02g39500
OsAffx.2916.1.S1_at--427--8451Chr02:23834254..23834278 (25 bp)
GGCCAAGCTCGCCAAATCCGGTGGT
LOC_Os02g39500
Target Sequence 
ACGGTGGCAGTGGACTTGGCCTCTCCTCTTCTCGCATGCCACCACCGCCTTACCTGCGTCTTCCTCGCGAAGGTGGCCGC
TGACTGGAGCTTTGCAAGTCGGGGCTCACCGGATCTGGCTGTGGGCGACGATTGCGGCGAGTTGGGGCATGGCGCGATGG
CAACGAGTCGCGACAATGGTGTGGCAAGGGTCGCCAGATCCAGTGGCGGTGTCTCGTCGAGGCACGACGCGCGGGCGCGC
GGCTGCAGCGAGTCGCGACGACGGCGTGGCCAAGCTCGCCAAATCCGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis