Browse Element(s) Details


OsAffx.12414.1.S1_at

Description tigr:9630.m03798
TID=OsAffx.12414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL049607 protein phosphatase 2C-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3948010/11Protein phosphatase 2C containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39450NANA2+23789800..23790681hypothetical protein
LOC_Os02g39460OsAffx.30298.1.S1_x_at1/112+23796208..23796775hypothetical protein
LOC_Os02g39470OsAffx.24649.5.S1_s_at11/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.2.S1_x_at10/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.10096.1.S1_x_at2/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.5.S1_x_at1/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39480OsAffx.12414.1.S1_at10/112+23815372..23820241Protein phosphatase 2C containing protein
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein
LOC_Os02g39510OsAffx.12415.1.S1_at11/112+23839940..23840735hypothetical protein
LOC_Os02g39520Os.49903.1.S2_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed
LOC_Os02g39520Os.49903.1.S1_s_at11/112+23843870..23847859transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12414.1.S1_at--458--9311Chr02:23816520..23816544 (25 bp)
TCCCTTTCAGGGATCACATGTCAAG
LOC_Os02g39480
OsAffx.12414.1.S1_at--760--9331NONE
TCGCGAAGGCAAGAGCTCTGTCAAA
NONE
OsAffx.12414.1.S1_at--414--6172Chr06:24777866..24778025 (25 bp)
GAGGATAGCCAATTAGCCACAAACA
NONE
OsAffx.12414.1.S1_at--619--6191Chr02:23815746..23815770 (25 bp)
GAGGAAACTCTACACACCACTTGCG
LOC_Os02g39480
OsAffx.12414.1.S1_at--869--9831Chr02:23815736..23815760 (25 bp)
TACACACCACTTGCGAGAAGCTCGT
LOC_Os02g39480
OsAffx.12414.1.S1_at--829--2691Chr02:23815719..23815743 (25 bp)
AAGCTCGTCGAGAATTGCCTGGAAT
LOC_Os02g39480
OsAffx.12414.1.S1_at--397--5231Chr02:23815698..23815722 (25 bp)
GAATCGAGGAACAACGCGACGGCCA
LOC_Os02g39480
OsAffx.12414.1.S1_at--788--311Chr02:23815674..23815698 (25 bp)
ATACTGGTCCAGTTCAAGCCAGGCG
LOC_Os02g39480
OsAffx.12414.1.S1_at--348--3871Chr02:23815508..23815532 (25 bp)
CTGTTCTGCCCGACATCCAGGAGGG
LOC_Os02g39480
OsAffx.12414.1.S1_at--144--1491Chr02:23815448..23815472 (25 bp)
AGCAACATCAGCACAACCCAGAGGG
LOC_Os02g39480
OsAffx.12414.1.S1_at--473--2551Chr02:23815409..23815433 (25 bp)
AACTCGACCTCGATGACGCGCTTGA
LOC_Os02g39480
Target Sequence 
TCCCTTTCAGGGATCACATGTCAAGTCAGGATGTGGTTGATTTCGTACATGAGAAATTAAACTCGCGAAGGCAAGAGCTC
TGTCAAAGTTTGATAAATCAGGGAAAGAAAAGAGAATGCTTTACAGAGGATAGCCAATTAGCCACAAACAAGAACATAGC
TCCAAATACAACAACACTGGGGGAGGAAACTCTACACACCACTTGCGAGAAGCTCGTCGAGAATTGCCTGGAATCGAGGA
ACAACGCGACGGCCATACTGGTCCAGTTCAAGCCAGGCGCCGACCAGCCGATCCCTGCCCTGCCCAACATCCAGGAGGGC
TCCGACGAAGTCGCCGGCGGCGCCGACCAGCCGATCCCTGTCCTGCCCAACATCCAGCAGGTCTCCGACGAAGTCGCCGG
CGGCACCGGCCAGCCGATCCCTGTTCTGCCCGACATCCAGGAGGGCTCCGACGAAGTCGCCGGCGGCGCCGCCGTGGCTG
AGCAACATCAGCACAACCCAGAGGGCGGTGGCGAGCAGCAACTCGACCTCGATGACGCGCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis