Browse Element(s) Details


OsAffx.24649.5.S1_s_at

Description tigr:9630.m03774
TID=OsAffx.24649.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cyclin, N-terminal domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3947011/11Cyclin, N-terminal domain containing protein
LOC_Os02g3924011/11Cyclin, N-terminal domain containing protein
LOC_Os02g3943011/11Cyclin, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39420Os.55732.1.S1_at4/112+23778892..23780064Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_s_at11/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.2.S1_x_at4/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39430OsAffx.24649.5.S1_x_at1/112+23783066..23784268Cyclin, N-terminal domain containing protein
LOC_Os02g39440NANA2+23785790..23786943retrotransposon protein, putative, unclassified
LOC_Os02g39450NANA2+23789800..23790681hypothetical protein
LOC_Os02g39460OsAffx.30298.1.S1_x_at1/112+23796208..23796775hypothetical protein
LOC_Os02g39470OsAffx.24649.5.S1_s_at11/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.2.S1_x_at10/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.10096.1.S1_x_at2/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39470OsAffx.24649.5.S1_x_at1/112+23804423..23813955Cyclin, N-terminal domain containing protein
LOC_Os02g39480OsAffx.12414.1.S1_at10/112+23815372..23820241Protein phosphatase 2C containing protein
LOC_Os02g39490Os.56104.1.A1_at10/112+23823322..23828856oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g39500OsAffx.2916.1.S1_at11/112+23834221..23834586hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24649.5.S1_s_at--560--4553Chr02:23700921..23700945 (25 bp)
GCGACATGTACAGTCAAATCGCATG
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--1124--4093Chr02:23700922..23700946 (25 bp)
CGACATGTACAGTCAAATCGCATGT
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--810--753Chr02:23700926..23700950 (25 bp)
ATGTACAGTCAAATCGCATGTCCTC
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--520--8753Chr02:23700927..23700951 (25 bp)
TGTACAGTCAAATCGCATGTCCTCG
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--1047--7013Chr02:23700928..23700952 (25 bp)
GTACAGTCAAATCGCATGTCCTCGC
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--862--2133Chr02:23700930..23700954 (25 bp)
ACAGTCAAATCGCATGTCCTCGCTT
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--391--3453Chr02:23700931..23700955 (25 bp)
CAGTCAAATCGCATGTCCTCGCTTT
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--68--1173Chr02:23700932..23700956 (25 bp)
AGTCAAATCGCATGTCCTCGCTTTG
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--259--7093Chr02:23700933..23700957 (25 bp)
GTCAAATCGCATGTCCTCGCTTTGC
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--1025--9693Chr02:23700934..23700958 (25 bp)
TCAAATCGCATGTCCTCGCTTTGCT
LOC_Os02g39240
OsAffx.24649.5.S1_s_at--910--3293Chr02:23700935..23700959 (25 bp)
CAAATCGCATGTCCTCGCTTTGCTC
LOC_Os02g39240
Target Sequence 
GCGACATGTACAGTCAAATCGCATGTCCTCGCTTTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24649.5.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis